Locus 736

Sequence ID 3L_DroMel_CAF1
Location 2,219,540 – 2,219,632
Length 92
Max. P 0.535134
window1126

overview

Window 6

Location 2,219,540 – 2,219,632
Length 92
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 78.32
Mean single sequence MFE -25.07
Consensus MFE -11.75
Energy contribution -12.03
Covariance contribution 0.28
Combinations/Pair 1.29
Mean z-score -2.04
Structure conservation index 0.47
SVM decision value 0.00
SVM RNA-class probability 0.535134
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2219540 92 + 23771897
UAUUUUGACCACAUCUUAGUGCAUUUGGAUUU----------UGACCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA
...................(((((..((((..----------.(((...........((((((....))))))..)))...))))..(((....)))))))) ( -19.12)
>DroSec_CAF1 595 92 + 1
UAUUUCUACCAAAUCUAAGUGCACUUGGAUUU----------GGGCCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA
........(((((((((((....)))))))))----------)).........((((((((((....))))))..............(((....))))))). ( -28.20)
>DroSim_CAF1 536 92 + 1
UAUUUUGACCAAAUCUAAGUGCACUUGGAUUU----------GGGCCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA
........(((((((((((....)))))))))----------)).........((((((((((....))))))..............(((....))))))). ( -28.20)
>DroEre_CAF1 654 92 + 1
AAUUUUGACCACAAAUAAGUACACAUGCAUUU----------GUGGCCCACCUGUACGGCCAGCGCCUUAGCCUUAUCCUUAUCCUCCAGCUUGCUGAUGCA
........((((((((..(((....)))))))----------)))).......(((((((.(((.........................))).)))).))). ( -17.81)
>DroYak_CAF1 669 92 + 1
UGCUGUGACCACAUCUAAGUACACUUAGAUUG----------GUGCCCCACCUGUACGGCCAGAGCCUUGGCCUUGUCCUUAUCUUCCAGCUUGCUGAUGCA
.((((..((((.(((((((....)))))))))----------)).............((((((....))))))..............)))).(((....))) ( -27.30)
>DroPer_CAF1 684 96 + 1
UAGGUUU------CCUGCGAGUACUCGCAUUUUGUAUUCCAAGAGACGCACUUGAGUGGCCAAGGCCUUCGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA
...((((------(.((.((((((.........)))))))).)))))(((...((..((.((((((....)))))).))...))...(((....))).))). ( -29.80)
>consensus
UAUUUUGACCACAUCUAAGUGCACUUGGAUUU__________GGGCCCCACCUGUAUGGCCAGUGCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA
..................(((((..(((...................)))..)))))((((((....))))))..............(((....)))..... (-11.75 = -12.03 +   0.28) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:46 2006