Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,219,540 – 2,219,632 |
Length | 92 |
Max. P | 0.535134 |
Location | 2,219,540 – 2,219,632 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 78.32 |
Mean single sequence MFE | -25.07 |
Consensus MFE | -11.75 |
Energy contribution | -12.03 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.29 |
Mean z-score | -2.04 |
Structure conservation index | 0.47 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.535134 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2219540 92 + 23771897 UAUUUUGACCACAUCUUAGUGCAUUUGGAUUU----------UGACCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA ...................(((((..((((..----------.(((...........((((((....))))))..)))...))))..(((....)))))))) ( -19.12) >DroSec_CAF1 595 92 + 1 UAUUUCUACCAAAUCUAAGUGCACUUGGAUUU----------GGGCCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA ........(((((((((((....)))))))))----------)).........((((((((((....))))))..............(((....))))))). ( -28.20) >DroSim_CAF1 536 92 + 1 UAUUUUGACCAAAUCUAAGUGCACUUGGAUUU----------GGGCCCCACCUGUAUGGCCAGUUCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA ........(((((((((((....)))))))))----------)).........((((((((((....))))))..............(((....))))))). ( -28.20) >DroEre_CAF1 654 92 + 1 AAUUUUGACCACAAAUAAGUACACAUGCAUUU----------GUGGCCCACCUGUACGGCCAGCGCCUUAGCCUUAUCCUUAUCCUCCAGCUUGCUGAUGCA ........((((((((..(((....)))))))----------)))).......(((((((.(((.........................))).)))).))). ( -17.81) >DroYak_CAF1 669 92 + 1 UGCUGUGACCACAUCUAAGUACACUUAGAUUG----------GUGCCCCACCUGUACGGCCAGAGCCUUGGCCUUGUCCUUAUCUUCCAGCUUGCUGAUGCA .((((..((((.(((((((....)))))))))----------)).............((((((....))))))..............)))).(((....))) ( -27.30) >DroPer_CAF1 684 96 + 1 UAGGUUU------CCUGCGAGUACUCGCAUUUUGUAUUCCAAGAGACGCACUUGAGUGGCCAAGGCCUUCGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA ...((((------(.((.((((((.........)))))))).)))))(((...((..((.((((((....)))))).))...))...(((....))).))). ( -29.80) >consensus UAUUUUGACCACAUCUAAGUGCACUUGGAUUU__________GGGCCCCACCUGUAUGGCCAGUGCCUUGGCCUUGUCCUUAUCCUCCAGCUUGCUGAUGCA ..................(((((..(((...................)))..)))))((((((....))))))..............(((....)))..... (-11.75 = -12.03 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:46 2006