Locus 7355

Sequence ID 3L_DroMel_CAF1
Location 19,722,713 – 19,722,833
Length 120
Max. P 0.867641
window11944

overview

Window 4

Location 19,722,713 – 19,722,833
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -22.82
Consensus MFE -21.36
Energy contribution -21.24
Covariance contribution -0.12
Combinations/Pair 1.08
Mean z-score -1.35
Structure conservation index 0.94
SVM decision value 0.86
SVM RNA-class probability 0.867641
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19722713 120 - 23771897
UCUGUUCUGUGUCAACAUUUACGAAGAAAUACAAAUGUUUCCCCCAUUUCCAUGGUGUUUGCUUGCAAAAUAUUAAGUAAUAAACAUGUUCGACUCCCUAUUUCUGGCUUCAAAGCCAAC
.......(((....)))....((((((((((....)))))).........((((....(((((((........)))))))....))))))))............(((((....))))).. ( -19.60)
>DroSec_CAF1 31919 120 - 1
UCUGUUCUGUGUCAACAUUUGCGCAGAAAUACAAAUGUUUCCCCCAUUUCCAUGGUGUUUGCUUGCAAAAUAUUAAGUAAUAAACAUGUUAGACUCCCUAUUUCUGGCUUCAAAGCCAAC
((((((((((((........))))))))......((((((...((((....))))...(((((((........))))))).))))))..))))...........(((((....))))).. ( -24.10)
>DroSim_CAF1 34055 120 - 1
UCUGUUCUGUGUCAACAUUUGCGCAGAAAUACAAAUGUUUCCCCCAUUUCCAUGGUGUUUGCUUGCAAAAUAUUAAGUAAUAAACAUGUUCGACUCCCUAUUUCUGGCUUCAAAGCCAAC
....((((((((........))))))))......((((((...((((....))))...(((((((........))))))).)))))).................(((((....))))).. ( -22.90)
>DroEre_CAF1 34578 120 - 1
UCUGUUCUGUGUCAACAUUUGCGCAGAAAUACAAAUGUUUCCCCUAUUUCCAUGUUGUUUGCUUGCAAAAUAUUAAGUAAUAAACAUGUUCGACUCCUUAUUUCUGGCUCCAAAGCCAAC
....((((((((........))))))))......................((((((..(((((((........)))))))..))))))................(((((....))))).. ( -24.60)
>DroYak_CAF1 32637 120 - 1
UCUGUUCUGUGUCAACAUUUGCGCAGAAAUACAAAUGUUUCCCCUAUUUCUAUGGUGUUUGCUUGAAAAAUAUUAAGUAAUAAACAUGUUCGACUCCUUAUUUCUGGCUUCAAAGCCAAC
....((((((((........))))))))......((((((...((((....))))...((((((((......)))))))).)))))).................(((((....))))).. ( -22.90)
>consensus
UCUGUUCUGUGUCAACAUUUGCGCAGAAAUACAAAUGUUUCCCCCAUUUCCAUGGUGUUUGCUUGCAAAAUAUUAAGUAAUAAACAUGUUCGACUCCCUAUUUCUGGCUUCAAAGCCAAC
....((((((((........))))))))......................((((....(((((((........)))))))....))))................(((((....))))).. (-21.36 = -21.24 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:47 2006