Locus 7354

Sequence ID 3L_DroMel_CAF1
Location 19,721,792 – 19,721,910
Length 118
Max. P 0.981949
window11943

overview

Window 3

Location 19,721,792 – 19,721,910
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 93.09
Mean single sequence MFE -25.33
Consensus MFE -19.98
Energy contribution -20.22
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -2.64
Structure conservation index 0.79
SVM decision value 1.90
SVM RNA-class probability 0.981949
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19721792 118 - 23771897
UGCUUC--GUUUUUUUUUUUACUUUUUGUAUAUUCAUUUGCGCUAAAACCGCAAAAAGUUUUGUGGUUCGGCCACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
((((((--...(((((....((....((.(((.....(((((.....((((((((....))))))))(((....))))))))...)))))......))...)))))..))))))...... ( -24.90)
>DroSec_CAF1 30947 117 - 1
UGCUUCU---UUUUUUUUUUACUUUUUGUAUAUUCAUUUGCGCUAAAACCGCAAAAAGUUUUGUCGUUCGGCCACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
(((((((---.(((((....((..............((((((.......))))))(((..(((.(((.((....)))))))).)))..........))...))))).)))))))...... ( -23.10)
>DroSim_CAF1 33088 120 - 1
UGCUUCUCGUUUUUUUUUUCACUUUUUGUAUAUUCAUUUGCGCUAAAACCGCAAAAAGUUUUGUGGUUCGGCCACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
(((((((.((((((.....((.....((.(((.....(((((.....((((((((....))))))))(((....))))))))...))))).....))....)))))))))))))...... ( -26.80)
>DroEre_CAF1 33655 115 - 1
UGCUUCG--CU---UUUUUCAUUUUUUGUAUAUUCAUUUGCGCUAAAACCGCAAAAAAUUUUGUGGUUCGGCCACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
((((((.--.(---((((.((((...((.(((.....(((((.....((((((((....))))))))(((....))))))))...)))))...))))....)))))..))))))...... ( -27.20)
>DroYak_CAF1 31732 114 - 1
UGCUUAG---U---UUUUUCUUUUUUUGUAUAUUCAUUUGCGCUAAAGCCGCAAAAAAUUUUGUGGUUCGGCAACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
......(---(---(.(((((.((((((.(((((...(((((.....((((((((....))))))))(((....))))))))...........)))))..)))))).))))).))).... ( -24.64)
>consensus
UGCUUCG___UUUUUUUUUCACUUUUUGUAUAUUCAUUUGCGCUAAAACCGCAAAAAGUUUUGUGGUUCGGCCACGACGCAAUCUUAUCAUCUAAUGUUCUAAAAAUAGAAGCAACAACU
((((((....................((......)).(((((.....((((((((....))))))))(((....))))))))..........................))))))...... (-19.98 = -20.22 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:46 2006