Locus 7353

Sequence ID 3L_DroMel_CAF1
Location 19,719,808 – 19,719,926
Length 118
Max. P 0.794166
window11942

overview

Window 2

Location 19,719,808 – 19,719,926
Length 118
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 88.53
Mean single sequence MFE -29.52
Consensus MFE -22.25
Energy contribution -22.85
Covariance contribution 0.60
Combinations/Pair 1.14
Mean z-score -1.91
Structure conservation index 0.75
SVM decision value 0.60
SVM RNA-class probability 0.794166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19719808 118 - 23771897
UUUCCUAAGAGGUCUCGAUAUCCUUGUAAUUUGAUUUGCAUAUAUGCAAAUGCACUCGAAGCAAGCUAAAGGUGC--CUUGACUCCCUUGCCAAACAAGGACUUGCAGCUCCAUCUUUGA
....(.((((((.(((((..(((((((..(((((..(((((........))))).)))))(((((...(((....--)))......)))))...))))))).))).))..)).)))).). ( -27.10)
>DroSec_CAF1 28839 120 - 1
UUUCCUGAGAGGUCUCGAUAUCCUUGUAAUAUGAUUUGCAUAUAUGCAAAUGCACUCGAAGCAAGCUAGAGGUUCCACUUGCUUCCUUUGGCAAACAAGGACUUGCAGCUCCUUCUUUGA
....(.((((((.(((((..(((((((......(((((((....)))))))((....((((((((............)))))))).....))..))))))).))).))..)).)))).). ( -32.10)
>DroSim_CAF1 31046 120 - 1
UUUCCUGAGAGGUCUCGAUAUCCUUGUAAUUUGAUUUGCAUAUAUGCAAAUGCACUCGAAGCAAGCUAGAGGUUCCACUUGACUCCUUUGGCAAACAAGGACUUGCAGCUCCUUCUUUGA
....(.((((((.(((((..(((((((..(((((..(((((........))))).)))))....((((((((.((.....))..))))))))..))))))).))).))..)).)))).). ( -32.40)
>DroEre_CAF1 31636 118 - 1
UUUCCUGAGAGGUCUCGAUAUCCUUGUUAUUAAAUUUGCAUAUAUGCAAAUGCACUUGAAGAUAGCUAAAGGUCC--CUUGACUCCUUUGGUAAACAAGGAUUUUCAGCUUCUUCUUUGA
......((((((.((.((.(((((((((.....(((((((....))))))).............((((((((...--.......)))))))).))))))))).)).))))))))...... ( -33.00)
>DroYak_CAF1 29697 114 - 1
UUUCCUAAGAGGUCUCGAUAUCCU---UAUUAGAUUUGCAUAUAUGCAAAUGCUCUUGAAGAUAGCUAGAGGUCC--CUUGACUCCUUUG-CAAACAAGAAUUUUCAUCUCCUUCUUUGA
.....((((.(..(((..((((.(---((..(((((((((....))))))).))..))).))))....)))..).--)))).........-((((.(((............))).)))). ( -23.00)
>consensus
UUUCCUGAGAGGUCUCGAUAUCCUUGUAAUUUGAUUUGCAUAUAUGCAAAUGCACUCGAAGCAAGCUAGAGGUCC__CUUGACUCCUUUGGCAAACAAGGACUUGCAGCUCCUUCUUUGA
....(.((((((........(((((((......(((((((....))))))).............((((((((............))))))))..))))))).........)).)))).). (-22.25 = -22.85 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:45 2006