Locus 7352

Sequence ID 3L_DroMel_CAF1
Location 19,718,234 – 19,718,345
Length 111
Max. P 0.754388
window11941

overview

Window 1

Location 19,718,234 – 19,718,345
Length 111
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.06
Mean single sequence MFE -27.33
Consensus MFE -17.20
Energy contribution -18.24
Covariance contribution 1.04
Combinations/Pair 1.36
Mean z-score -1.94
Structure conservation index 0.63
SVM decision value 0.48
SVM RNA-class probability 0.754388
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19718234 111 + 23771897
AUG---UCCCACAGGAAUAAUGCCA----UAAAACAAGGGGUCGAGGCAAAAAGGCCUU--UUUAUUGGUCAAAUUAAAUUACUUUGUACUUUUGGGAGCCCACAGCAAUGUGCGCAAAA
...---(((((.(((.((((((((.----................))))....((((..--......)))).............)))).))).)))))((.((((....)))).)).... ( -28.13)
>DroSec_CAF1 27294 111 + 1
AUG---UCCCACAGGAAUAAUGCCA----UAAAAAAAGGAGCCGAGGCAAAAAGGCUUC--UUUAUUGGCCAAAUUAAAUUACUUUGGACUUUUGGGAGCCCACAGCAAUGUGUGCAAAA
...---(((((.(((......((((----.....(((((((((..........))))))--)))..))))((((.........))))..))).)))))((.((((....)))).)).... ( -33.60)
>DroSim_CAF1 29489 95 + 1
AUG---UCUCACAGGAAUAAUGCCA----UAAAACAAGGAGCCGAGGCAAAAGGUCUUUUUUUUAUUGGCCAAAU------------------UGGGAGCCCACGGCUAUUUGUGCAAAA
.((---(......((.......)).----....(((((.(((((........((((...........))))....------------------(((....)))))))).))))))))... ( -21.30)
>DroEre_CAF1 30039 113 + 1
AUGUCGUCCCACAGGAAUAAUGUUA----UAAAACAAGAGACAGAAGCAAAAAAGCUU---UUUAUUGGCCAAAUUAAAUUACUUUGGACUUCUGGGAGCCCACAGCAAUGUGUGCAAAA
......(((((.(((..........----.....(((.....((((((......))))---))..))).(((((.........))))).))).)))))((.((((....)))).)).... ( -25.40)
>DroYak_CAF1 28096 115 + 1
AUG---CCCCACAGGAAUAAUGUUAUGUAUAAAACAAGGGACAGAGGCAAAAAAGCUUU--UUUAUUGGCCAAAUUAAAUUACUUUGGACUUUUGGGGGCCCACAGCAAUGUGUGCAAAA
...---(((((.((((((((((((.(((.....)))...))))(((((......)))))--.)))))..(((((.........))))).))).)))))((.((((....)))).)).... ( -28.20)
>consensus
AUG___UCCCACAGGAAUAAUGCCA____UAAAACAAGGGGCCGAGGCAAAAAGGCUUU__UUUAUUGGCCAAAUUAAAUUACUUUGGACUUUUGGGAGCCCACAGCAAUGUGUGCAAAA
......(((((.(((.....((((.....................))))....((((..........))))..................))).)))))((.((((....)))).)).... (-17.20 = -18.24 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:44 2006