Locus 7349

Sequence ID 3L_DroMel_CAF1
Location 19,715,832 – 19,715,944
Length 112
Max. P 0.755069
window11936

overview

Window 6

Location 19,715,832 – 19,715,944
Length 112
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.67
Mean single sequence MFE -23.74
Consensus MFE -16.12
Energy contribution -17.04
Covariance contribution 0.92
Combinations/Pair 1.09
Mean z-score -2.24
Structure conservation index 0.68
SVM decision value 0.49
SVM RNA-class probability 0.755069
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19715832 112 + 23771897
AAGUUAUUAAAAAACUUUUGUGCCCGUAUCCAGGGUACACUUUUCCAAGAAUUUCCCCCA----CACACCGACUU--U--UUUUUCUUACACCUAAAUUGGUGGCGAGAGCAAAUUCGCA
(((((.......))))).(((((((.......))))))).........((((((......----...........--.--.........((((......))))((....))))))))... ( -24.30)
>DroSec_CAF1 24979 114 + 1
AAGUUAUUAAAAAACUUUUGUGCCCGUAUCCAGGGUACACUUUUCCAAGAAUUUCCCCCG----CACACCGACAUUUU--UUUUUCUUACACCUAAAUUGGUGGCGAGAGCAAAUUCGCA
(((((.......))))).(((((((.......))))))).........((((((.((.((----(.((((((......--.................))))))))).).).))))))... ( -25.70)
>DroSim_CAF1 27184 120 + 1
AAGUUAUUAAAAAACUUUUGUGCCCGUAUCCAGGGUACACUUUUCCAAGAAUUUCCCCCACCCCCUCACCGACAUUUUCUUUUUUCUUACACCUAAAUUGGUGGCGAGAGCAAAUUCGCA
(((((.......))))).(((((((.......))))))).........((((((...................................((((......))))((....))))))))... ( -24.30)
>DroEre_CAF1 27750 109 + 1
AAGUUAUUAAAAAACUUUUGUGCUCGCAUCCAGGUUAUUCCUUUCCAAGUAUUUCCUCCA----CCUACCAAC-------UUUUUCUUACACCCAAAUUGGUGGCGAGAGCAAAUUCGCA
................(((((.(((((....(((.....)))..................----.........-------.........((((......))))))))).)))))...... ( -19.00)
>DroYak_CAF1 25950 109 + 1
AAGUUAUUAAAAAACUUUUGCUCUCGUAUCCAGGUUAUUCCUUUCCAAGUAUUGCCUCCA----CCUACCGAU-------UUUUUCCUACACCCAAAUUGGUGGCGAGAGCAAAUUCACA
................((((((((((.....((((((((........))))..))))...----.((((((((-------((............))))))))))))))))))))...... ( -25.40)
>consensus
AAGUUAUUAAAAAACUUUUGUGCCCGUAUCCAGGGUACACUUUUCCAAGAAUUUCCCCCA____CACACCGAC_U__U__UUUUUCUUACACCUAAAUUGGUGGCGAGAGCAAAUUCGCA
(((((.......)))))..((((((.......))))))..........((((((...................................((((......))))((....))))))))... (-16.12 = -17.04 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:39 2006