| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,715,635 – 19,715,755 |
| Length | 120 |
| Max. P | 0.601292 |
| Location | 19,715,635 – 19,715,755 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 88.46 |
| Mean single sequence MFE | -44.06 |
| Consensus MFE | -31.42 |
| Energy contribution | -30.86 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.601292 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19715635 120 + 23771897 UUUUCCGCGGGCCUUGCAUGUGCAGAAAAGUGGGGGCGGGACCACGCCCACAGCAUAGUGCAUUGGGUGGGUGGCUAUGGAUGCAAAUGAAGUGGGGCGAGUGGAGCGGAGCUAAUUGCU ..((((((..((((..(...((((.....(((((.(.(....).).)))))..((((((.((((.....))))))))))..))))......)..))))..))))))...(((.....))) ( -44.20) >DroSec_CAF1 24792 117 + 1 UUUUCCGCGGGCCUUACAUGUGCUGAAAAGUGG--GCGGGACCACGCCCACAGCAUAGUGCACC-GGUGGGUGGCUAUGGAUGCAAAUGAAGUGGGGCGAGUGGAGCGGAGCUAAUUGCU ..((((((..(((((((...(((......((((--(((......)))))))..((((((.((((-....))))))))))...)))......)))))))..))))))...(((.....))) ( -50.80) >DroSim_CAF1 26997 117 + 1 UUUUCCGCGGGCCUUACAUGUCCUGAAAAGUGG--GCGGGACCACGCCCACGGCAUAGUGCAGC-AUUGGGUGGCUAUGGAUGCAAAUGAAGCGGGGCGAGUGGAGCGGAGCUAAUUGCU ...(((((...((..((.(((((((....((((--(((......)))))))..((((((.((.(-....).)))))))).............))))))).)))).)))))((.....)). ( -45.50) >DroEre_CAF1 27557 113 + 1 UUUUCCGCGGGCCUCACAUGUUCUGAAAAGUGG--GCGGGAGCACGCCCACAACAUAGUGUAGU-----GGUGGCUAUGGAUGCAAAUGAAGUGCGGCGAGUGGAGCGGAGUUAAUUGCU ...(((((..(((.(((............((((--(((......)))))))..((((((.....-----....))))))............))).)))..)))))((((......)))). ( -39.90) >DroYak_CAF1 25757 113 + 1 UUUUUCGCGGGCCUCACAUGUGCGGAAAAGUGG--GCGGGAACACGCCCAUAACAUAGUGUAGU-----GGUGGCCGUGGAUGCAAAUGAAGUGCAGCGAGUGGAGCGGAGUUAAUUGCU ...(((((.((((((((.((..(......((((--(((......)))))))......)..))))-----)).)))).....((((.......)))))))))...(((((......))))) ( -39.90) >consensus UUUUCCGCGGGCCUUACAUGUGCUGAAAAGUGG__GCGGGACCACGCCCACAGCAUAGUGCAGU___UGGGUGGCUAUGGAUGCAAAUGAAGUGGGGCGAGUGGAGCGGAGCUAAUUGCU ..((((((..(((((((............((((..(((......)))))))..((((((.((.(.....).))))))))............)))))))..))))))...(((.....))) (-31.42 = -30.86 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:38 2006