Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,701,183 – 19,701,281 |
Length | 98 |
Max. P | 0.577890 |
Location | 19,701,183 – 19,701,281 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 89.30 |
Mean single sequence MFE | -24.95 |
Consensus MFE | -18.55 |
Energy contribution | -20.30 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.74 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577890 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19701183 98 + 23771897 GCAACGGCCGCCAAAAGGCACAAAAUACAACAGCAAGAAGGCACAACAACU--CAAGUCAAGCCGAGUUGCAGAGCUCUCGUCUUGGCAAACUUAAAC--------------UC ......((((((....)))...........(.....)..))).........--...((((((.((((..((...)).)))).))))))..........--------------.. ( -21.80) >DroSec_CAF1 15279 111 + 1 GCAACGGCCGCCAAAAGGCACAAAAUACAACAGCAAGAAGGCACAACAACUCUCAAGACAAGCCAAGUUGCAGAGCUCUCGUCUUGGCAAACUUCAACUCGGAAGC---AGCUC ((((((((.(((....))).............((......))...................)))..)))))...(((..((..((((......))))..))..)))---..... ( -25.90) >DroSim_CAF1 17346 111 + 1 GCAACGGCCGCCAAAAGGCACAAAAUACAACAGCAAGAAGGCACAACAACUCUCAAGACAAGCCGAGUUGCAGAGCUCUCGUCUUGGCAAACUUCAACUCGGAAGC---AGCUC ((((((((.(((....))).............((......))...................)))..)))))...(((..((..((((......))))..))..)))---..... ( -25.90) >DroEre_CAF1 16368 112 + 1 GCAACGGCCGCCAAAAGGCACAAAAUACAACAGCAAAAAAGCACAACAACU--CAAGUCAAGCCGAGUUGCAGAGCUCUCGUCUUUGCAAACUUCAGCUCGGAAGCAUCAGCUC ((...(((.(((....))).............((......)).........--...)))...((((((((((((((....).))))))).......))))))..))........ ( -26.21) >consensus GCAACGGCCGCCAAAAGGCACAAAAUACAACAGCAAGAAGGCACAACAACU__CAAGACAAGCCGAGUUGCAGAGCUCUCGUCUUGGCAAACUUCAACUCGGAAGC___AGCUC ((((((((.(((....))).............((......))...................)))..))))).(((((...((....))...((((......))))....))))) (-18.55 = -20.30 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:22 2006