Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,216,175 – 2,216,295 |
Length | 120 |
Max. P | 0.500000 |
Location | 2,216,175 – 2,216,295 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.28 |
Mean single sequence MFE | -48.14 |
Consensus MFE | -28.98 |
Energy contribution | -30.04 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.24 |
Mean z-score | -1.88 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2216175 120 + 23771897 GAAGCCGCCGUGGGCGCGAAGCAAUGGCGCAAAGCAGUCCAGAUAGCCAAAGUCCUGGAUGAACCGGAGCUAAUACAGCGUUAUGCUGUGGAUCUAGCCAAGCAUCUGGCCUUCGCGGGA ....((((.((..((((.(.....).))))...))((.((((((.((.......((((.....)))).((((.((((((.....))))))....))))...)))))))).))..)))).. ( -40.60) >DroVir_CAF1 292194 120 + 1 GAGGCAGCUGUUGGCGCCCGGCAGUGGCGCAAGGCGGUCCAAAUCGCCAAGGUGCUGGACGAGCCAGAGCUGAUACAGCGUCAUGCAUUGGAUCUGUCCAAGCACUUGGCCUUCGCCGGC ..(((.((((((((...))))))))(((....((((((....)))))).(((((((((((((.((((.((((((.....)))).)).)))).)).)))).))))))).)))...)))... ( -55.00) >DroGri_CAF1 260869 120 + 1 GAGGCAGCUGUGGGCGCCAAGCAGUGGCGCAAAGCUGUGCAGAUUGCCAAGGUGCUGGACGAACCGGAACUGAUACAACGCUAUGCAUUAGAUCUGUCCAAGCAUUUGGCUUUUGCUGGC ...((((((....((((((.....))))))..))))))(((((..((((((.((((((((.....(((.(((((.((......)).))))).))))))).)))))))))).))))).... ( -49.20) >DroWil_CAF1 344056 120 + 1 GAAGCAGCUGUGGGCGCCAAACAAUGGCGCAAAGCAGUCCAAAUAGCCAAAGUCCUGGAUGAACCGGAGCUAAUUCAACGCUAUGCCCUGGAUUUGUCUAAGCACUUGGCAUUUGCAGGU ...((((((((..((((((.....))))))...))))).......(((((.(((.((((..((((((.((..............)).)))).))..)))).).)))))))...))).... ( -42.84) >DroMoj_CAF1 279794 120 + 1 GAGGCAGCGGUGGGCGCCAAGCAGUGGCGCAAGGCGGUGCAAAUAGCCAAGGUGCUGGACGAGCCGGAGCUGAUACAGCGCUAUGCCCUGGAUCUGUCGAAGCACUUGGCCUUCGCGGGC ((((((.((.(..((((((.....))))))..).)).))).....((((((.((((.(((((.((((.((((...))))((...)).)))).)).)))..)))))))))).)))...... ( -49.30) >DroAna_CAF1 261887 120 + 1 GAAGCAGCGGUAGGAGCCAAGCAGUGGCGCAAGGCGGUGCAAAUAGCAAAGGUUCUGGACGAGCCGGAGCUGAUCCAGCGGUAUGCACUGGAUCUUGCCAAGCAUUUGGCCUUUGCCGGA .......((((((..((((((((.((.(....).)).))).....((((.((((((((.....))))))))(((((((.(.....).))))))))))).......)))))..)))))).. ( -51.90) >consensus GAAGCAGCUGUGGGCGCCAAGCAGUGGCGCAAAGCGGUCCAAAUAGCCAAGGUGCUGGACGAACCGGAGCUGAUACAGCGCUAUGCACUGGAUCUGUCCAAGCACUUGGCCUUCGCCGGC ...((.((.((..((((((.....))))))...)).)).......((((((((..(((((((.((((.((..............)).)))).)).))))).)).))))))....)).... (-28.98 = -30.04 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:44 2006