Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,695,309 – 19,695,429 |
Length | 120 |
Max. P | 0.590427 |
Location | 19,695,309 – 19,695,429 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.82 |
Mean single sequence MFE | -32.71 |
Consensus MFE | -26.36 |
Energy contribution | -26.64 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19695309 120 + 23771897 UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUCUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGAACAUUCCGCCGGCCAUCCAAAAAAAG ..((((.......((((........)))).....))))(((((....(((....(((......)))...))).....)))))((((((((..............))))))))........ ( -31.94) >DroSec_CAF1 9582 120 + 1 UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUGUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCAAAUUCCGCCGGCCAUCCAAAAAAAG ..((((.......((((........)))).....))))(((((....((((...(((......)))..)))).....)))))((((((((..((.......)).))))))))........ ( -37.90) >DroSim_CAF1 11168 120 + 1 UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUGUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCAAAUUCCGCCGGCCAUCCAAAAAAAG ..((((.......((((........)))).....))))(((((....((((...(((......)))..)))).....)))))((((((((..((.......)).))))))))........ ( -37.90) >DroEre_CAF1 10108 117 + 1 UUCUGGUUCAUCAGCAUGUUACACAACGUCUACUCCAGCCGGCCCGCACUCUUCGAAAUAUCCUUCCUCAGUUCUCAACCGGGGGUGGCCAAGCGCAUCCCGCCGGCCAUC---AAGAAG ((((((((....((.(((((....))))))).....))))((((.((.......(((......)))...............((((((((...)).)))))))).))))...---.)))). ( -29.10) >DroYak_CAF1 10044 117 + 1 UUCUGGUUCAUCAGCAUGUUACACAACGUCUACUCCAGCCGGCCCUCACUCUUCGAAAUCUCCUUCCUUAGUUCUCAACCGGGGGUGGCCAAGCGCAUCCCGCCGGCCAUC---AAAAAG ..((((......((.(((((....)))))))...))))((((.....(((....(((......)))...)))......)))).(((((((..(((.....))).)))))))---...... ( -26.70) >consensus UUCUGGUUCAUCAGCAUGUUACACAAUGUCUACUCCAGCCGGCCCUCGCUCUUCGAAAUCUCCUUCCUCAGCUCUCAGCCGGGGGUGGCCAAGCACAUUCCGCCGGCCAUCCAAAAAAAG ..((((......((.(((((....)))))))...))))(((((....(((....(((......)))...))).....)))))((((((((..((.......)).))))))))........ (-26.36 = -26.64 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:15 2006