Locus 7336

Sequence ID 3L_DroMel_CAF1
Location 19,691,883 – 19,691,985
Length 102
Max. P 0.812183
window11912

overview

Window 2

Location 19,691,883 – 19,691,985
Length 102
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 78.12
Mean single sequence MFE -33.07
Consensus MFE -27.53
Energy contribution -26.95
Covariance contribution -0.58
Combinations/Pair 1.17
Mean z-score -1.23
Structure conservation index 0.83
SVM decision value 0.65
SVM RNA-class probability 0.812183
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19691883 102 - 23771897
ACCUAACGGCCCUCACUGGCGAUCUCAAGACGCGUCAGGGACUGGCCAUUUCCGGUGCCCUGACUAUGGCCCUGGAUGAGGUAAGUACUA----GCUUCGAUUUAU
.((....((((.......(((.((....)))))((((((((((((......))))).)))))))...))))..)).((((((........----))))))...... ( -37.30)
>DroPse_CAF1 5693 86 - 1
AUCUGACGGCUCUCACUGGCGAGCUCAAGACGCGUCAGGGCUUGGCCAUAUCCGGUGCGCUGACGAUGGCCCUGGAUGAGGUAAGA--------------------
.(((((((((((........))))........))))))).((((.((.(((((((.(.(((......))))))))))).)))))).-------------------- ( -29.60)
>DroWil_CAF1 6606 85 - 1
AUCUAACGGCCCUAACUGGCGAGCUAAAGGAUCGUCAGGGUUUGGCCAUAUCCGGUGCACUGACUAUGGCAUUGGAUGAGGUAUG---------------------
((((...((((....(((((((.(.....).))))))).....)))).((((((((((.(.......)))))))))))))))...--------------------- ( -32.30)
>DroMoj_CAF1 18979 91 - 1
AUCUGACGGCUCUCACUGGCGAGCUCAAGGACCGCCAGGGCUUGGCCAUAUCCGGUGCACUGACAAUGGCACUGGAUGAGGUAAGUUAAAC---------------
...((((((((....((((((..(.....)..)))))).....)))).((((((((((.(.......)))))))))))......))))...--------------- ( -35.40)
>DroAna_CAF1 5901 103 - 1
AUCUGACGGCCCUCACUGGCGACCUCAGCAUGCGCCAGGGAUUGGCCAUAUCCGGUGCGCUGACUAUGGCCCUGGAUGAGGUAAGUUCGUCCCAUCUUGACAU---
....(((((((((((((((((.(........))))))).....(((((((..(((....)))..))))))).....)))))...).)))))............--- ( -34.20)
>DroPer_CAF1 4130 86 - 1
AUCUGACGGCUCUCACUGGCGAGCUCAAGACGCGUCAGGGCUUGGCCAUAUCCGGUGCGCUGACGAUGGCCCUGGAUGAGGUAAGA--------------------
.(((((((((((........))))........))))))).((((.((.(((((((.(.(((......))))))))))).)))))).-------------------- ( -29.60)
>consensus
AUCUGACGGCCCUCACUGGCGAGCUCAAGACGCGUCAGGGCUUGGCCAUAUCCGGUGCGCUGACUAUGGCCCUGGAUGAGGUAAGU____________________
((((...((((....((((((...........)))))).....)))).(((((((.((.(.......))).)))))))))))........................ (-27.53 = -26.95 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:14 2006