Locus 7335

Sequence ID 3L_DroMel_CAF1
Location 19,687,951 – 19,688,048
Length 97
Max. P 0.745901
window11911

overview

Window 1

Location 19,687,951 – 19,688,048
Length 97
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 79.33
Mean single sequence MFE -23.50
Consensus MFE -11.65
Energy contribution -13.27
Covariance contribution 1.61
Combinations/Pair 1.18
Mean z-score -2.29
Structure conservation index 0.50
SVM decision value 0.46
SVM RNA-class probability 0.745901
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19687951 97 + 23771897
AUCAUUUGAUCCAUGAUGUUCUUGGUCUUACCACCACGCAUCUUCUUCAAGCGAUUGCUUAAG--GCAGUCGGGAGUAGAACAU---UAUGUACCAUUUAUU--
...........(((((((((((((((......))))........((((...(((((((.....--))))))))))).)))))))---))))...........-- ( -25.80)
>DroVir_CAF1 15137 98 + 1
AUCAUCUGAUCCAUGAUGUUUUUGGUUUUACCACCUCUCAUCUUCUUCAACCGAUUGCUGUGAAUGCAAAU------AAAGCAUAAUUACUUACUCUCUCUUAG
......(((.....((((....(((.....))).....))))....)))...((..(..((((((((....------...))))..))))...)..))...... ( -11.40)
>DroSec_CAF1 2238 97 + 1
AUCAUUUGGUCCAUGAUGUUCUUGGUCUUACCACCACGCAUCUUCUUCAAGCGAUUGCUAAAG--UCAGUCGGGAGCAGAACAU---UAUGUACCCAUCAUU--
.......(((.(((((((((((((((......)))).((.(((........(((((((....)--.))))))))))))))))))---)))).))).......-- ( -26.90)
>DroSim_CAF1 2230 97 + 1
AUCAUUUGGUCCAUGAUGUUCUUGGUCUUACCACCACGCAUCUUCUUCAAGCGAUUGCUAAAG--GCAGUCGGGAGCAGAAUAU---UAUGUACCCAUCAUU--
.......(((.(((((((((((((((......)))).((.(((........(((((((.....--)))))))))))))))))))---)))).))).......-- ( -28.90)
>DroEre_CAF1 2409 97 + 1
AUCAUUUGGUCCAUGAUGUUCUUGGUCUUGCCACCACGCAUCUUUUUCAAGCGAUUGCUAAAC--ACAGAAAGGAAUGGAAUAU---CAUGAGCCAAUUCUA--
.....((((..(((((((((((...((((((......)).(((......(((....)))....--..))).))))..)))))))---))))..)))).....-- ( -26.90)
>DroYak_CAF1 2287 97 + 1
AUCAUUUGAUCCAUGAUGUUCUUGGUUUUUCCACCACGCAUCUUUUUCAAGCGAUUGCUAAAC--GCAGUCAAGAAUAGAAUAU---UAUGUACCAAUGCUU--
.....(((...(((((((((((((((......))))................((((((.....--))))))......)))))))---))))...))).....-- ( -21.10)
>consensus
AUCAUUUGAUCCAUGAUGUUCUUGGUCUUACCACCACGCAUCUUCUUCAAGCGAUUGCUAAAG__GCAGUCGGGAGUAGAACAU___UAUGUACCAAUUAUU__
....((((.(((..(((((...((((......)))).)))))..........((((((.......)))))).))).))))........................ (-11.65 = -13.27 +   1.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:13 2006