Locus 7334

Sequence ID 3L_DroMel_CAF1
Location 19,687,608 – 19,687,714
Length 106
Max. P 0.903309
window11910

overview

Window 0

Location 19,687,608 – 19,687,714
Length 106
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 74.07
Mean single sequence MFE -31.10
Consensus MFE -16.92
Energy contribution -17.25
Covariance contribution 0.33
Combinations/Pair 1.23
Mean z-score -1.89
Structure conservation index 0.54
SVM decision value 1.03
SVM RNA-class probability 0.903309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19687608 106 - 23771897
-GGAGUUUCCUAUCUGUUAACUUCCAC--UAGGUAACCAUAUAUUUUAGCGACAUUGUUGGUUUUACUGCAAUGUCGGCGGAGAGCACACCGCUGCAAGUGGUGAACUU
-((((((..(.....)..))))))...--.((((.(((((.........(((((((((.(......).)))))))))((((........)))).....)))))..)))) ( -31.10)
>DroPse_CAF1 1939 101 - 1
-GUA-------CUCUGUUUGCCUCUCCUUCAGGUAACGAUCUAUUUCAGCGACAUUGUCGGCUUCACGGCCAUGUCAGCGGAGAGCACACCGCUGCAGGUGGUUAACUU
-...-------....(((.((((((((...((((....))))......(((((((.((((......)))).))))).))))))))..((((......)))))).))).. ( -31.90)
>DroWil_CAF1 2122 104 - 1
UACGUUUUUGUUUCUGU---CUUUUUA--UAGGUGACCAUCUAUUUUAGUGACAUUGUUGGGUUUACGGCCAUGUCGGCGGAGAGCACACCAUUGCAGGUGGUUAACUU
........(((((((((---(.....(--(((((....))))))......(((((.((((......)))).))))))))))))).))((((......))))........ ( -27.50)
>DroYak_CAF1 1893 93 - 1
--------------UUCUUACUAUUCC--UAGGUCACCAUAUAUUUUAGCGACAUUGUUGGUUUUACUGCAAUGUCGGCGGAGAGCACACCGCUACAAGUGGUGAACUU
--------------.............--.((.(((((((.........(((((((((.(......).)))))))))((((........)))).....))))))).)). ( -29.10)
>DroAna_CAF1 1865 97 - 1
-GGUGUUUUCGUCCU---------UUG--CAGGUCACUAUAUACUUUAGCGACAUUGUUGGAUUCACCGCCAUGUCGGCGGAGAGCACACCACUGCAGGUGGUUAACUU
-.((((((((((((.---------..(--((((((.(((.......))).))).)))).))))....((((.....))))))))))))(((((.....)))))...... ( -35.10)
>DroPer_CAF1 358 101 - 1
-GUA-------CUCUGUUUGCCUCUCCUUCAGGUAACGAUCUAUUUCAGCGACAUUGUCGGCUUCACGGCCAUGUCAGCGGAGAGCACACCGCUGCAGGUGGUUAACUU
-...-------....(((.((((((((...((((....))))......(((((((.((((......)))).))))).))))))))..((((......)))))).))).. ( -31.90)
>consensus
_GGA_______CUCUGUUU_CUUCUCC__CAGGUAACCAUAUAUUUUAGCGACAUUGUUGGCUUCACGGCCAUGUCGGCGGAGAGCACACCGCUGCAGGUGGUUAACUU
..............................((.(((((((..........(((((.((.(......).)).)))))(((((........)))))....))))))).)). (-16.92 = -17.25 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:12 2006