Locus 7333

Sequence ID 3L_DroMel_CAF1
Location 19,686,219 – 19,686,316
Length 97
Max. P 0.718697
window11909

overview

Window 9

Location 19,686,219 – 19,686,316
Length 97
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 77.36
Mean single sequence MFE -39.33
Consensus MFE -31.21
Energy contribution -30.63
Covariance contribution -0.58
Combinations/Pair 1.43
Mean z-score -0.99
Structure conservation index 0.79
SVM decision value 0.39
SVM RNA-class probability 0.718697
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19686219 97 + 23771897
-----------------GCG---UUGGGAAAGCUGCCUGAAUAGCGGAGAGCAGGCAGUUGGCCGUUGUCGUGGCGCAUCAGAAGGCCCAGCUCAUCGUCGUAGCCAUCGGUGGCAU
-----------------(((---(((((..(((((((((............))))))))).((((......))))...........)))))).(((((..(....)..))))))).. ( -34.50)
>DroVir_CAF1 13311 97 + 1
-----------------GCA---UUGGCAAAGCUGCUCGAGUAACGCAGCAUGGGCAGCUGCCCGUUGUCGUGACGCAUGAGCAGGCCCAGCUCAUCGUCGUAGCCGUCAUUGGCAU
-----------------((.---.((((...(((((.........)))))((((((....)))))).((..(((((.((((((.......)))))))))))..)).))))...)).. ( -40.90)
>DroPse_CAF1 536 114 + 1
CAUGGGCGUGGGCAUUGGCA---UUGGGGAAGCUGCCGGAGUAGCGGAGCGUGGGCAGCUGGCCGUUGUCGUGUCGCAUGAGCAGGCCCAGCUCAUCGUCAUAGCUAUCGUUGGCAU
.((((((.(((((...((((---.(((...(((((((.(.((......)).).)))))))..))).)))).....((....))..))))))))))).......((((....)))).. ( -45.60)
>DroGri_CAF1 13290 100 + 1
-----------------AUGUUGUUGGUGAAGCUGCUCGAAUAGCGCAACGUGGGCAGUUGCCCGUUGUCGUGACGCAUGAGCAGCCCCAGCUCAUCGUCAUAGCCAUCUGUGGCAU
-----------------(((..(((((.(..((((((((....(((((((..((((....)))))))).)))......)))))))))))))).))).(((((((....))))))).. ( -40.50)
>DroMoj_CAF1 13379 97 + 1
-----------------GCG---UUGGCAAAGCUGCUCGAGUAGCGCAGCAUGGGCAGCUGCCCGUUGUCGUGACGCAUGAGCAGGCCCCGCUCAUCGUCGUAGCUAUCAUUGGCGU
-----------------(((---(..(...((((((.......(((((((..((((....)))))))).)))((((.((((((.(....)))))))))))))))))....)..)))) ( -41.60)
>DroAna_CAF1 494 97 + 1
-----------------GCG---UUGGGGAAACUGCCCGAAUAGCGGAGGGUAGGCGGCUGACCAUUAUCGCGGCGCAUGAGGAGACCCAACUCAUCGUCAUAGCCAUCGGUGGCGU
-----------------(((---.(((((...((((((..........))))))....))..)))....)))((((.(((((.........)))))))))...((((....)))).. ( -32.90)
>consensus
_________________GCG___UUGGGAAAGCUGCCCGAAUAGCGCAGCGUGGGCAGCUGCCCGUUGUCGUGACGCAUGAGCAGGCCCAGCUCAUCGUCAUAGCCAUCGGUGGCAU
.................(((....(((...(((((((((..(......)..)))))))))..)))....)))((((.((((((.......))))))))))...((((....)))).. (-31.21 = -30.63 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:11 2006