| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,683,463 – 19,683,553 |
| Length | 90 |
| Max. P | 0.839342 |
| Location | 19,683,463 – 19,683,553 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 82.48 |
| Mean single sequence MFE | -21.77 |
| Consensus MFE | -14.69 |
| Energy contribution | -15.27 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.70 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.839342 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19683463 90 - 23771897 AACAAAGCAAUUU------UCGUGGUCUUUUGGCCAGUAUUUAAUAUAAAUUCGCUGGCAAAAGUCGCGUAUUAA-UUGCAAAAGAACACAU-AUUUA ......((((((.------.(((((.((((((.((((((((((...)))))..))))))))))))))))....))-))))............-..... ( -25.20) >DroSec_CAF1 93610 90 - 1 AACAAAGCAAUUC------UCGUGGUCUUUUGGCCAGUAUUUAAAUUAAAUUCGCUGGCAAGAGUCGCGUAUUAA-UUGCUAAAGAACACAU-AUUUA .....(((((((.------.(((((.((((((.((((((((((...)))))..))))))))))))))))....))-)))))...........-..... ( -25.30) >DroSim_CAF1 98513 90 - 1 AACAAAGCAAUUU------UCGUGGUCUUUUGGCCAGUAUUUAAUUUAAAUUCGCUGGCAAGAGUCGCGUAUUAA-UUGCAAAAGAACACAU-AUUUA ......((((((.------.(((((.((((((.((((((((((...)))))..))))))))))))))))....))-))))............-..... ( -25.30) >DroEre_CAF1 92943 89 - 1 AACAAAGCAAUUU------UCGUGGUCUCUUGUCCAGUAUUUAAUUUAAAUUCGCUGGCAAGAGUCGCGUAUUAA-UUGCAGAA-UACAUAU-AUUUA ......((((((.------.(((((.((((((.((((((((((...)))))..))))))))))))))))....))-))))....-.......-..... ( -27.90) >DroYak_CAF1 115715 89 - 1 AACAAAGCAAUUU------UCGUGGUCUUUUGGCCAGUAUUUAAUUUAAAUUCGCUGGCAAGAGUCGCGUAUUAA-GUGCAAAA-UACACAU-AUUAA ......(((....------.(((((.((((((.((((((((((...)))))..))))))))))))))))......-.)))....-.......-..... ( -22.10) >DroPer_CAF1 100862 91 - 1 AACAAAGCAAUUUCAUAUCUCUCGCUAUUUUUG--GGUAUUUAAUAUUAUUUCGGUCGAAUAAGUCGCGCAUUUAGUUACU-----AUACAUUCUCUU ......((.(((..((((((............)--)))))..))).........(.(((.....))))))...........-----............ ( -4.80) >consensus AACAAAGCAAUUU______UCGUGGUCUUUUGGCCAGUAUUUAAUUUAAAUUCGCUGGCAAGAGUCGCGUAUUAA_UUGCAAAA_AACACAU_AUUUA ......((((..........(((((.((((((.(((((...............)))))))))))))))).......)))).................. (-14.69 = -15.27 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:10 2006