Locus 7331

Sequence ID 3L_DroMel_CAF1
Location 19,683,352 – 19,683,445
Length 93
Max. P 0.986565
window11907

overview

Window 7

Location 19,683,352 – 19,683,445
Length 93
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 78.61
Mean single sequence MFE -35.13
Consensus MFE -21.55
Energy contribution -20.67
Covariance contribution -0.88
Combinations/Pair 1.28
Mean z-score -3.14
Structure conservation index 0.61
SVM decision value 2.05
SVM RNA-class probability 0.986565
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19683352 93 - 23771897
CUUGUUGCGCCUGUGCGGAUUCUUCUUUUGCAUGUCGACUGGG----CGGGCAAAAGAAAGUU--AGCACGGAGAACAACAACGCAGGUGACUU---GACC-U
.((((((..(((((((.((((.(((((((((.((((.....))----)).)))))))))))))--.)))))).)..))))))...((((.....---.)))-) ( -35.00)
>DroPse_CAF1 97785 100 - 1
CUUGUUGCGCUUGUGUAGAUUCUUCCUUUGCAUGUUGACCUGGACGACAAGCAAAGGAAAGUUUUUACACGCAGAACAACAACGCACGCCCCGC---GACCCU
.((((((..((((((((((..((((((((((.(((((.......))))).))))))).)))..)))))))).))..))))))(((.......))---)..... ( -37.50)
>DroSec_CAF1 93502 90 - 1
CUUGUUGCGCCUGUGCGGAUUC---UUUUGCAUGUCGUCUGGG----CGGGCAAAAGAAAGUU--AGCACGGAGAACAACAACGCAGGUGACUU---GACC-U
.((((((..(((((((...(((---((((((.((((.....))----)).)))))))))....--.)))))).)..))))))...((((.....---.)))-) ( -32.80)
>DroEre_CAF1 92832 93 - 1
CUUGUUGCGCCUGUGCGGAUUCUUCUUUUGCAUGUCGACUGGG----CGAGCAGAAGAAAGUU--AGCACGGAGAACAACAACGCAGGUGAAUU---GACC-U
.((((((..(((((((.((((.(((((((((.((((.....))----)).)))))))))))))--.)))))).)..))))))...((((.....---.)))-) ( -35.10)
>DroAna_CAF1 93208 96 - 1
CUUGUUGCCCCUGUGUAGAUU-UUCUUUUGCAUGUUUCGCGGGAC--AGGGCAAAAGAUAGUU--UGCACGGAGAACAACCAAGCAAG--ACUUCCCGACCUU
(((((((..((((((((((((-.((((((((.(((((....))))--)..)))))))).))))--))))))).)..))).))))....--............. ( -32.90)
>DroPer_CAF1 100744 100 - 1
CUUGUUGCGCUUGUGUAGAUUCUUCCUUUGCAUGUUGACCUGGACGACAAGCAAAGGAAAGUUUUUACACGCAGAACAACAACGCACGCCCCGC---GACCCU
.((((((..((((((((((..((((((((((.(((((.......))))).))))))).)))..)))))))).))..))))))(((.......))---)..... ( -37.50)
>consensus
CUUGUUGCGCCUGUGCAGAUUCUUCUUUUGCAUGUCGACCGGG____CGAGCAAAAGAAAGUU__AGCACGGAGAACAACAACGCAGGUGACUU___GACC_U
.((((((..(((((((.((((.(((((((((...(((..........))))))))))))))))...)))))).)..))))))..................... (-21.55 = -20.67 +  -0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:09 2006