Locus 7330

Sequence ID 3L_DroMel_CAF1
Location 19,671,007 – 19,671,099
Length 92
Max. P 0.978377
window11906

overview

Window 6

Location 19,671,007 – 19,671,099
Length 92
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 68.98
Mean single sequence MFE -14.69
Consensus MFE -9.30
Energy contribution -8.93
Covariance contribution -0.38
Combinations/Pair 1.18
Mean z-score -1.77
Structure conservation index 0.63
SVM decision value 1.81
SVM RNA-class probability 0.978377
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19671007 92 + 23771897
------AAAAGCUAUUAAAAACCUAAGGCAAUCCUUAAAAACAAAAUAUUUAUUCAAAGUACUCACCACAGGUGUUCUCAUCGGAUCCAUCCGAGCAA
------....((...........(((((....))))).....................(....((((...))))....).(((((....))))))).. ( -13.30)
>DroSec_CAF1 85378 70 + 1
------AAGAGC----------------------UUAAAAACAAAAUAAUUAUGCAAAGUACUCACCACAGGUGUUCUCAUCGGAUCCAUCCGAGCAA
------......----------------------..................(((...(....((((...))))....).(((((....)))))))). ( -12.10)
>DroSim_CAF1 90407 70 + 1
------AAAAGC----------------------UUAAAAACAAAAUAAUUAUCCAAAGUACUCACCACAGGUGUUCUCAUCGGAUCCAUCCGAGCAA
------....((----------------------........................(....((((...))))....).(((((....))))))).. ( -10.80)
>DroYak_CAF1 107357 98 + 1
GCGCCUAUAUGCUAUAAAAAAAACUUGCGAUUCCAGUGAAACAAAACAGUGGUUCGAGGCACUUACCACAGGUGUUCUCAUCGGAUCCAUCUGAGCAA
((((((....((..............))((..(((.((........)).))).)).))))........((((((.(((....)))..)))))).)).. ( -22.54)
>consensus
______AAAAGC______________________UUAAAAACAAAAUAAUUAUUCAAAGUACUCACCACAGGUGUUCUCAUCGGAUCCAUCCGAGCAA
..........((...................................................((((...))))......(((((....))))))).. ( -9.30 =  -8.93 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:08 2006