Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,215,811 – 2,215,927 |
Length | 116 |
Max. P | 0.689721 |
Location | 2,215,811 – 2,215,927 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.52 |
Mean single sequence MFE | -46.73 |
Consensus MFE | -31.90 |
Energy contribution | -32.77 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.37 |
Mean z-score | -1.52 |
Structure conservation index | 0.68 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2215811 116 - 23771897 CCUCAGUCACUUGCAGCAUUACCUGCUCAUCCUGCAGGAUGUGCGGUGUCUUCAGAGCCAAACGAGCAGCCCUCGCCGGUUUGUUGGCCUUCAUGUACAGGGACAUCGCCUGCUGG .............(((((...(((((.......)))))....(((((((((((((((((((.(((((.((....))..))))))))))..)).))....)))))))))).))))). ( -40.60) >DroVir_CAF1 291830 116 - 1 CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAGCUGCGGCGUCUUUAGGGCCAGGCGUGCGGCACGCGCCGGCUUGUUGGCCUUGAGGAACAGAGCCAUUGCCUGCUGC ............((((((.(((((((((.....).)))))))).(((.(((((((((((((.((.(((((....))).)).))))))))))))))).....)))......)))))) ( -53.90) >DroGri_CAF1 260505 116 - 1 CUUCGGUUACCUGCAGCAUUAGCUGCUCAUCCUGCAGCAGUGGUGGGGUCUUCAGGGCAAGGCGUGCGGCUCGCGCUGGCUUGUUGGCCUUGAGGAACAGUGCCAUUGCCUGCUGC ....((......(((((....)))))....)).(((((((..((((.(((((((((((.(((((((((...)))))..))))....))))))))))....).))))..).)))))) ( -52.60) >DroWil_CAF1 343692 116 - 1 CUUCGGUUACCUGCAACAUUAGCUGCUCAUCCUGCAACAAUUGCGGCGUCUUGAGAGCCAGGCGAGCCGCUCUCGCCGGCUUAUUUGCUUUUAAGUACAAGGCCAUUGCCUGUUGC ............((((((...(((((................)))))((((((.(((((.((((((.....)))))))))))...((((....)))))))))).......)))))) ( -38.89) >DroMoj_CAF1 279430 116 - 1 CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAACUGGGGCGUCUUUAGGGCCAGGCGAGCAGCGCGUGCCGGCUUGUUGGCCUUGAGGAACAGUGCCAUGGCCUGCUCC ....((......(((((....)))))....)).(((((...(((.((.(((((((((((((.(((((.((....))..))))))))))))))))))...)).)))..).))))... ( -50.80) >DroAna_CAF1 261523 116 - 1 CUUCCGUGACCUGUAGCAUCAGUUGCUCAUCCUGCAGAAGAUGCGGCGUUUUCAGGGCCAGCCGGGCAGCCCUGGCCGGUUUGUUGGCCUUCAGGUACAACGACAUGGCUUGCUGA ....(((.(((((..(((((..((((.......))))..))))).........((((((((((((.((....)).)))))....))))))))))))...))).............. ( -43.60) >consensus CCUCGGUUACCUGCAGCAUCAGCUGCUCAUCCUGCAGCAGCUGCGGCGUCUUCAGGGCCAGGCGAGCAGCCCGCGCCGGCUUGUUGGCCUUGAGGAACAGGGCCAUUGCCUGCUGC ............((((((...(((((.......)))))......(((((((((((((((((.(((((.((....))..))))))))))))))))).))...)))......)))))) (-31.90 = -32.77 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:43 2006