Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,661,302 – 19,661,393 |
Length | 91 |
Max. P | 0.892767 |
Location | 19,661,302 – 19,661,393 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 73.25 |
Mean single sequence MFE | -29.45 |
Consensus MFE | -9.11 |
Energy contribution | -10.75 |
Covariance contribution | 1.64 |
Combinations/Pair | 1.10 |
Mean z-score | -2.46 |
Structure conservation index | 0.31 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892767 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19661302 91 - 23771897 ACUUA-UCCC-UGUGACUCAGCGAACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCUUUCGAUGGCUCGAGUCGUCGGAGGUUUA ...((-..((-(.(((((((((((....))...-(((((.....))))))))))..((((((((((......)))))))))))))).)))..)) ( -39.10) >DroPse_CAF1 78286 77 - 1 AUUUAACAACUGGUGACUCAGCG-GCAAUCGAAAACAAGACUCUCUUUUGCUGGAAUACCUG----------------CGGCAGGAGAGGUUUA ......(..((((....))))..-)............((((.(((((((((((.(.....).----------------))))))))))))))). ( -20.00) >DroSec_CAF1 75806 91 - 1 ACUUAAUCCC-UGUGACUCAGCG-ACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGUCGGAGGUUUA ........((-(.((((((((((-.....)...-(((((.....))))))))))..(((((((((.(.....)))))))))))))).))).... ( -36.40) >DroSim_CAF1 78582 91 - 1 ACUUAUUCCU-UGUGACUCAGCG-ACACUCGCA-AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGUCGGAGGUUUA ...((..(((-(.((((((((((-.....)...-(((((.....))))))))))..(((((((((.(.....))))))))))))))))))..)) ( -34.10) >DroEre_CAF1 75397 88 - 1 C-UUAAUCCC-UGUGACUCAGCG-ACACUCGCA-AUAAG-CCCUCUUCU-CUGGAACCGUCGAGCACUCGACCGCUCGAGUCGGCGGAGGUUUA .-.(((.(((-((((((((.(((-.....))).-...((-(((......-..))....(((((....))))).))).))))).)))).)).))) ( -27.10) >DroPer_CAF1 78619 77 - 1 AUUUAACAACUGGUGACUCAGCG-GCAAUCGAAAACAAGACUCUCUUUUGCUGGAAUACCUG----------------CGGCAGGAGAGGUUUA ......(..((((....))))..-)............((((.(((((((((((.(.....).----------------))))))))))))))). ( -20.00) >consensus ACUUAAUCCC_UGUGACUCAGCG_ACACUCGCA_AGAAGACUCUCUUCUGCUGGAAGACUCGAGCACUCGAUGGCUCGAGUCGGCGGAGGUUUA ....................(((......))).....((((.((((..((........(((((((........))))))).))..)))))))). ( -9.11 = -10.75 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:07 2006