Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,645,192 – 19,645,301 |
Length | 109 |
Max. P | 0.517398 |
Location | 19,645,192 – 19,645,301 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 82.17 |
Mean single sequence MFE | -24.93 |
Consensus MFE | -17.00 |
Energy contribution | -17.67 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.517398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19645192 109 - 23771897 ---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGAGACAGAGAGACAAACGGCGGGAAAAGUGGAAAAGUGCUUAGUGCCUUAGUUUAAAGCGAAU ---..(.((((((((.....)))))))))(((..((...))..))).((.((((...........(.((.......)).)..(((.((.....))))).))))...)).... ( -26.20) >DroSec_CAF1 59874 94 - 1 ---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGG---------------GACAAACGGCGGGAAAAGCGGAAAAGUGCUUAGUGCCUUAGUUUAAAGCGAAU ---....((((((((.....))))))))((((((((...(((..---------------....)))((((....(((((......)))))..))))...)))..)))))... ( -25.00) >DroSim_CAF1 61887 109 - 1 ---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGAGACAGAGAGACAAACGGCGGGAAAAGCGGAAAAGGGCUUAGUGCCUUAGUUUAAAGCGAAU ---..(.((((((((.....)))))))))(((..((...))..))).((.((((...........(.((.......)).)...(((((.....))))).))))...)).... ( -31.00) >DroEre_CAF1 59850 93 - 1 ---AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCGGCGA--------GACAAACGGCGGGAA--------AAGUGCUUAGUGCCUUGGUUUAAAGCGGAU ---....((((((((.....))))))))((((..((...))..))))((.(--------(((....((((..((--------......))..))))...))))...)).... ( -27.30) >DroWil_CAF1 88713 94 - 1 ACAAAGACACAUAACAGUUUGUUAUUUGCGCUUGACAAAGUUGGGCAACGAGAC--------AAA--ACGGUAA--------AAGUGCUUAGUGCCUUAGUUUAAAGCAAUU .....(.((.(((((.....))))).)))((((...(((.(.(((((..(((..--------...--((.....--------..)).)))..))))).).))).)))).... ( -18.30) >DroAna_CAF1 58191 93 - 1 ---AAGACACAUAACACUUUGUUAUUUGCGCUUGACAAAGUUGGGCAGCGA--------GACAAACGGCGUUAA--------AAGUGCUUAGUGCCUUGGUUUAAAGCGAAU ---..(.((.(((((.....))))).)))(((..((...))..))).((.(--------(((....((((((((--------......))))))))...))))...)).... ( -21.80) >consensus ___AAGACACAUAACACUUUGUUAUGUGCGCUUGACAAAGUUGGGCAGCGA________GACAAACGGCGGGAA________AAGUGCUUAGUGCCUUAGUUUAAAGCGAAU .....(.((((((((.....)))))))))(((..((...))..)))........................................((((...((....))...)))).... (-17.00 = -17.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:06 2006