| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,644,627 – 19,644,720 |
| Length | 93 |
| Max. P | 0.507308 |
| Location | 19,644,627 – 19,644,720 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 87.71 |
| Mean single sequence MFE | -41.10 |
| Consensus MFE | -30.17 |
| Energy contribution | -29.07 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.73 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.507308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19644627 93 + 23771897 GCGACUGGAUCAUGCAUCAUGAUCAUGGGCUGCCGGGUU-------CCUGGUGUCUGGUGCCUGGUUCGGGAUGUGGCGAUGAUUGUCCGCUGCGUGCUU ((..((((((((.((((((.(((........(((((...-------.)))))))))))))).)))))))).(((..(((.........)))..))))).. ( -35.90) >DroSec_CAF1 59296 93 + 1 UCGAGUGGAUCAUGGAUCAUGAUCAUGGGCUGCCGGGUG-------CCGGGUGCCUGGUGGCUGUUUCGGGAUGUGGCAAUGAUUGUCCGCUGCAUGCCU ..(((..(((((((...)))))))...(((..(((((..-------(...)..)))))..)))..)))((.(((..((...........))..))).)). ( -39.40) >DroSim_CAF1 61302 100 + 1 GCGAGUGGAUCAUGGAUCAUGAUCAUGGGCUGCCGGGUGCCGGGUGCCGGGUGCCUGGUGCCUGGUUCGGGAUGUGGCAAUGAUUGUCCGCUGCGUGCCU ((((((((((....((((((..(((((..((((((((..(((((..(...)..)))))..))))))..))..)))))..))))))))))))).))).... ( -48.00) >consensus GCGAGUGGAUCAUGGAUCAUGAUCAUGGGCUGCCGGGUG_______CCGGGUGCCUGGUGCCUGGUUCGGGAUGUGGCAAUGAUUGUCCGCUGCGUGCCU (((....(((((((...)))))))..((((.(((.((.........)).)))))))..))).......((.(((..((...........))..))).)). (-30.17 = -29.07 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:05 2006