Locus 7326

Sequence ID 3L_DroMel_CAF1
Location 19,640,113 – 19,640,222
Length 109
Max. P 0.875265
window11902

overview

Window 2

Location 19,640,113 – 19,640,222
Length 109
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 81.61
Mean single sequence MFE -18.02
Consensus MFE -13.37
Energy contribution -13.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.25
Structure conservation index 0.74
SVM decision value 0.89
SVM RNA-class probability 0.875265
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19640113 109 - 23771897
------AAGUGGAGGC-CGAAUCCCGACCAAGCUCAAAGAUUCUUUAUAAGCGCAGGCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAUCUC
------..(((..((.-((.....)).))..(((.((((...))))...))).....)))...(((...))).......((((((((((((..........))))))))))))... ( -19.10)
>DroPse_CAF1 56913 115 - 1
GGGCCCAGCUCCAUAC-CGAAUCCCGACCAAGCUCAAAGAUUCUUUAUAAGCGCAGGCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAUCUC
..(((..(((..(((.-.(((((..((......))...)))))..))).)))...))).....(((...))).......((((((((((((..........))))))))))))... ( -23.20)
>DroGri_CAF1 60542 87 - 1
--------------------------CCCAAGCUCAAAGAUUCUUUAUAAGCGC--GCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAAC-C
--------------------------.....(((.((((...))))...)))..--.......(((...)))........(((((((((((..........)))))))))))..-. ( -12.50)
>DroWil_CAF1 82019 95 - 1
--------------GGC--AGUC---GCAAAGCUCAAAGAUUCUUUAUAAGCGC--GCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAUCCU
--------------(((--.(((---((...(((.((((...))))...)))))--).))...))).............((((((((((((..........))))))))))))... ( -16.60)
>DroMoj_CAF1 60966 87 - 1
--------------------------CCCGAGCUCAAAGAUUCUUUAUAAGCGC--GCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUACC-C
--------------------------..((.(((.((((...))))...))).)--)......(((...)))........(((((((((((..........)))))))))))..-. ( -13.50)
>DroPer_CAF1 56791 115 - 1
GGGCCCAGCUCCAUAC-CGAAUCCCGACCAAGCUCAAAGAUUCUUUAUAAGCGCAGGCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAUCUC
..(((..(((..(((.-.(((((..((......))...)))))..))).)))...))).....(((...))).......((((((((((((..........))))))))))))... ( -23.20)
>consensus
_______________C___AAUC___ACCAAGCUCAAAGAUUCUUUAUAAGCGC__GCACAAAGUCAAAGACAAUCAAAAUAUUUGCAUAUUACCAAUUUUAUAUGCAAAUAUCUC
......................................((((........((....)).....(((...)))))))....(((((((((((..........))))))))))).... (-13.37 = -13.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:04 2006