Locus 7323

Sequence ID 3L_DroMel_CAF1
Location 19,624,960 – 19,625,054
Length 94
Max. P 0.936972
window11898

overview

Window 8

Location 19,624,960 – 19,625,054
Length 94
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 65.38
Mean single sequence MFE -18.30
Consensus MFE -11.03
Energy contribution -12.23
Covariance contribution 1.20
Combinations/Pair 1.20
Mean z-score -1.72
Structure conservation index 0.60
SVM decision value 1.26
SVM RNA-class probability 0.936972
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19624960 94 - 23771897
AA----ACUCCUCACUCCAGCCAAGGGAUAA--AACGAGCACCUGCUCCUGCACUGGGAAAAAUGAAUUAAUCCAUAGUGCCAUCUUAUAAUACUUUUGU
..----...............((((((....--...((((....))))..(((((((((............))).))))))............)))))). ( -18.50)
>DroSec_CAF1 39721 96 - 1
AA----ACUUCCCACACCAGCCAAGGGACAAAAAAGGAGCACCUGCUCCUGCACUGAAAAAAAUUACUUAAGUCUUAGUGUCAUCUUAUGAUACUUUUGU
..----...((((...........))))(((((.((((((....))))))...........................(((((((...)))))))))))). ( -21.20)
>DroSim_CAF1 41886 76 - 1
AA----ACUUCCCACUCCAGCCAAGGGACAAAAAAGGAGCACCUGCUCCUGCACUGGAAAAAA--------------------UCGUAUGAUACUUUUGU
..----.........(((((((...)).......((((((....))))))...))))).....--------------------................. ( -15.50)
>DroEre_CAF1 40395 79 - 1
AA----AC--CCCACCCAAACGAAGGGA---AGGAGGAGCACCUGCUCCUGCACUGCAAAAAAUGAC-AGUUCCAUAGUGUGAUCUCUC-----------
..----..--......((.((....(((---.(.((((((....)))))).)((((((.....)).)-))))))...)).)).......----------- ( -20.20)
>DroYak_CAF1 40139 84 - 1
AACCAAACUCCCCGAACCAACCAAGGGA---AAGAAGAGCACCUGCUCCUGCACUGGAAAAAAUACC-AGUUCCACAGUGUGAUCUCU------------
........((((............))))---.(((.((.((((((....((.(((((........))-)))..))))).))).)))))------------ ( -16.10)
>consensus
AA____ACUCCCCACACCAGCCAAGGGA_AAAAAAGGAGCACCUGCUCCUGCACUGGAAAAAAUGAC_AAAUCCAUAGUGUCAUCUUAU_AUACUUUUGU
..........(((...........))).......((((((....))))))((((((...................))))))................... (-11.03 = -12.23 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:44:00 2006