Locus 7322

Sequence ID 3L_DroMel_CAF1
Location 19,622,106 – 19,622,226
Length 120
Max. P 0.868900
window11897

overview

Window 7

Location 19,622,106 – 19,622,226
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.94
Mean single sequence MFE -38.38
Consensus MFE -33.17
Energy contribution -33.37
Covariance contribution 0.20
Combinations/Pair 1.07
Mean z-score -1.82
Structure conservation index 0.86
SVM decision value 0.86
SVM RNA-class probability 0.868900
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19622106 120 - 23771897
GCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCGCACGAAUCCAUGGAGGGAUCACAGGAUUACGAUGCCGUUGAAAAGGGUGAAAGUCC
......(((.(((((((((((((((....))))).(((((((......(((..((((....((....))...))))..)))......))))).)).)))))))))).))).......... ( -37.30)
>DroVir_CAF1 37442 120 - 1
GCAGAAUCUAUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACGUGCACAUCACACGAAUCCAUGGAGGGAUCACAGGAUUACGAUGCCGUUGAAAAGGGUGAAAGUCC
......(((.(((((((((((((((....))))).(((((((.....(((((.((((.......))))..((....)))))))....))))).)).)))))))))).))).......... ( -38.80)
>DroGri_CAF1 38056 120 - 1
UCAGAAUCUCUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACGUGCACAUCACACGAAUCCAUGGAGGGAUCACAGGAUUACGAUGCCGUUGAAAAGGGUGAAAGUCC
(((...(((.(((((((((((((((....))))).(((((((.....(((((.((((.......))))..((....)))))))....))))).)).)))))))))).))).)))...... ( -40.00)
>DroWil_CAF1 57258 120 - 1
GCAGAAUCUUUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGUCCCACAUGUACAUCACAUGAAUCCAUGGAAGGAUCACAGGAUUAUGAUGCCAUUGAAAAGGGUGAAAGUCC
......(((((((((((((((((((....)))))...(((((..(((......(((((.....)))))......)))..)))))............)))))))))))))).......... ( -40.60)
>DroYak_CAF1 37211 120 - 1
GCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGACUCGGCCAGCCCCACAUGCACAUCCCAUGAAUCCAUGGAGGGAUCACAGGAUUACGACGCCGUUGAAAAGGGUGAAAGUCC
......(((.(((((((((.(((((....)))))......(((.((.((.......)).....(((((....))))).))((((....)))).))).))))))))).))).......... ( -33.70)
>DroMoj_CAF1 38409 120 - 1
UCAGAAUCUUUUCAAUGGCAACGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACGUGCACAUCACACGAAUCCAUGGAGGGAUCACAGGAUUACGAUGCCGUUGAAAAGGGUGAAAGUCC
(((...((((((((((((((.((((((((..(.((.((((((((....))....(((.......))))))))).))..)..)).....)))).)).)))))))))))))).)))...... ( -39.90)
>consensus
GCAGAAUCUGUUCAAUGGCAGCGAAUCAUUUCGCACGGAUUCGGCCAGCCCCACAUGCACAUCACACGAAUCCAUGGAGGGAUCACAGGAUUACGAUGCCGUUGAAAAGGGUGAAAGUCC
......(((.(((((((((((((((....)))))...(((((..(((......((((.......))))......)))..)))))............)))))))))).))).......... (-33.17 = -33.37 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:59 2006