Locus 7321

Sequence ID 3L_DroMel_CAF1
Location 19,617,837 – 19,617,929
Length 92
Max. P 0.998572
window11896

overview

Window 6

Location 19,617,837 – 19,617,929
Length 92
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 77.86
Mean single sequence MFE -15.37
Consensus MFE -11.79
Energy contribution -11.79
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.66
Structure conservation index 0.77
SVM decision value 3.15
SVM RNA-class probability 0.998572
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19617837 92 - 23771897
CACCAACCCAGGCACAUAUCAGUGGUGGGUUUCCAGUUGUCAGAUUCAAAUGUCCUAUAUUGCUUGAAUCCAAAAUC----UACAUUCAAAAUAUA
....((((((..(((......))).))))))...........(((((((..(........)..))))))).......----............... ( -14.30)
>DroSec_CAF1 32879 83 - 1
CACCAACCCACGCACAUAUCAGUGGUGGGUUUCUAAUUUAAAGAUUCAAAA-------------UGAAUCAAAACUCUACCUACAUUCCAAAUAUA
....(((((((.(((......))))))))))...........(((((....-------------.))))).......................... ( -18.70)
>DroSim_CAF1 33004 79 - 1
CACCAACCCAGGCACAUAUCAGUGGUGGGUUUUUAAUAUACAGAUUCAAAA-------------UGAAUCCAAAAUC----UACAUUCACAAUAUA
....((((((..(((......))).))))))...........(((((....-------------.))))).......----............... ( -13.10)
>consensus
CACCAACCCAGGCACAUAUCAGUGGUGGGUUUCUAAUUUACAGAUUCAAAA_____________UGAAUCCAAAAUC____UACAUUCAAAAUAUA
....((((((..(((......))).))))))...........((((((................)))))).......................... (-11.79 = -11.79 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:58 2006