Locus 732

Sequence ID 3L_DroMel_CAF1
Location 2,213,335 – 2,213,442
Length 107
Max. P 0.771360
window1122

overview

Window 2

Location 2,213,335 – 2,213,442
Length 107
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 79.46
Mean single sequence MFE -29.24
Consensus MFE -21.03
Energy contribution -20.60
Covariance contribution -0.43
Combinations/Pair 1.10
Mean z-score -1.68
Structure conservation index 0.72
SVM decision value 0.53
SVM RNA-class probability 0.771360
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2213335 107 - 23771897
UCUGCUGAUUGGGGGACCAGGCGAGUCCUGCUAUUCGUUGGAUUUGCUCCUGGAAAAGAAAGCAGUUUUAAUUGUUAUAUAGAG---AGCCAUCAAGCUAUUCUAUGCGA
.(((((...(((....)))(((((((((.((.....)).)))))))))............)))))............(((((((---(((......))).)))))))... ( -32.40)
>DroSec_CAF1 265029 107 - 1
UCUGCUGAUUGGGUGACCAGGCUAGUCCUGCUAUUCGUUGGAUUUGCUCCUGGAAAAGAAAGUAGUUUUGAUAGUUAUAUAGAA---AGCUAGCAAGCUACUCUAUGCGA
..(((....(((....(((((..(((((.((.....)).)))))....))))).......((((((((...(((((........---)))))..))))))))))).))). ( -27.20)
>DroSim_CAF1 265460 107 - 1
UCUGCUGAUUGGGUGACCAGGCUAGUCCUGCUAUUCGUUGGAUUUGCUCCUGGAAAAGAAAGUAGUUUUGAUAGUUAUAUAGAA---AGCUACAAAGCUACUCUAUGCGA
..(((....(((....(((((..(((((.((.....)).)))))....))))).......((((((((((.(((((........---)))))))))))))))))).))). ( -31.20)
>DroEre_CAF1 271953 109 - 1
UCUGCUGAUUGGGGGACCAGGCUAGUCCCGCAAUUCGUUGGAUUUGCUCCUGGAAAUAAGAGCAGUUUUAACUAUUAUUUAUCCUAUAUUUA-UUAGUUAUCCUAUACGA
......(((((.(((((.......))))).)))))(((.(((.((((((.((....)).))))))...((((((.((..(((...)))..))-.)))))))))...))). ( -28.40)
>DroYak_CAF1 264575 89 - 1
UCUGCUGAUUGGGGGACCAGGCUAGUCCCGCUAUUCGUUGGAUUUGCUCCUGGAAAGAAGAGCAGUUUAACUUAUUAUAUAAAU-----------AG----------CGU
...(((((.((((((((.......))))).))).))((((((((.((((((....))..)))))))))))).............-----------))----------).. ( -27.00)
>consensus
UCUGCUGAUUGGGGGACCAGGCUAGUCCUGCUAUUCGUUGGAUUUGCUCCUGGAAAAGAAAGCAGUUUUAAUUGUUAUAUAGAA___AGCUA_CAAGCUACUCUAUGCGA
.(((((...(((....)))(((.(((((.((.....)).))))).)))............)))))...............................((........)).. (-21.03 = -20.60 +  -0.43)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:42 2006