Locus 7319

Sequence ID 3L_DroMel_CAF1
Location 19,613,856 – 19,613,961
Length 105
Max. P 0.664911
window11894

overview

Window 4

Location 19,613,856 – 19,613,961
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 66.43
Mean single sequence MFE -29.22
Consensus MFE -9.09
Energy contribution -8.20
Covariance contribution -0.89
Combinations/Pair 1.26
Mean z-score -1.92
Structure conservation index 0.31
SVM decision value 0.28
SVM RNA-class probability 0.664911
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19613856 105 - 23771897
GUCUAUAAAGUCAAAAGAGG-UUCGUUGAUAACAAAUCGAGGGUUCGAUGACUUGUUAUUGU-------------UUGUUGCAAUUUCUAAAUUUGGAAA-UUGGAGGGGAAUGAUUACG
.......((((((...(((.-.((.(((((.....))))).)))))..))))))((.((..(-------------((.((.(((((((((....))))))-)))..)).)))..)).)). ( -24.40)
>DroPse_CAF1 27160 120 - 1
GGCCGUAAAGUCGCGAGCGAAAGCAUUGAUAAGAAAGAGCCUGAUCAAUGACUUGUUUUGGCUCGCAAUUUUGUUGUUUUUCGAUUUCUAUAUUUGGAACAGAAGUCGCGUGAUAAGGCU
((((.((((((.((((((.(((((((((((.((.......)).))))).....)))))).)))))).))))))(((((...((((((((...........))))))))...))))))))) ( -37.80)
>DroSec_CAF1 28908 105 - 1
CGCUAUAAAGUCAAGAGAGG-UUCGUUGAUAACAAAUCUGGGGAUCGAUGACUUGUUAUUGU-------------UUGUUGCAAUUUCUAUAUUUGGAAA-UUGGAGGGAAAUGAUUGCG
(((.....(((((.((.(((-(.(((((((..(.......)..))))))))))).))....(-------------((.((.(((((((((....))))))-))).)).))).)))))))) ( -26.50)
>DroEre_CAF1 28898 103 - 1
GGCUAUAAAGUCAA-AGAGG-UUCGCUGAUAACUAAUCG-GGGAUCGAUGACUUGUUAUUGU-------------UUGUUGCGAUUUCUAAAUUUGGAGC-UCGGUGGGCAAUGAUAAGC
((((....))))..-...((-(((.(((((.....))))-)))))).....(((((((((((-------------(..(..(((.(((((....))))).-))))..)))))))))))). ( -30.50)
>DroYak_CAF1 28557 103 - 1
GGCUAUAAAGCCAA-AGAGG-UUCGCUGAUAACGAAUCG-GGGAUCGAUGACUUGUUAUUGU-------------UUGUUGCGAUUUCUAAAUUUGGAGC-UUUGUGGGGAACGAUAAGC
((((....))))..-...((-(((.(((((.....))))-)))))).........(((((((-------------((.(..(((.(((((....))))).-.)))..).))))))))).. ( -30.30)
>DroPer_CAF1 27202 118 - 1
GGCCGUAAAGUCGCGAGCGAAAGCAUUGAUAAGAAAGAGCCUGAUCAAUGACUUGUUUUGGCUCGCAAU-UUGUUGUUUUUCGAUUUCUAAAU-UGGAACAGNNNNNNNNNNNNNNNNNN
(((......)))((((((.(((((((((((.((.......)).))))).....)))))).))))))...-........((((((((....)))-)))))..................... ( -25.80)
>consensus
GGCUAUAAAGUCAAGAGAGG_UUCGUUGAUAACAAAUCG_GGGAUCGAUGACUUGUUAUUGU_____________UUGUUGCGAUUUCUAAAUUUGGAAC_UUGGUGGGGAAUGAUAACC
.......(((((....((....))((((((..(.......)..)))))))))))...............................(((((....)))))..................... ( -9.09 =  -8.20 +  -0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:56 2006