Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,594,950 – 19,595,046 |
Length | 96 |
Max. P | 0.534303 |
Location | 19,594,950 – 19,595,046 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.80 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -19.55 |
Energy contribution | -19.72 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.16 |
Mean z-score | -1.02 |
Structure conservation index | 0.76 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.534303 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19594950 96 + 23771897 UGAACGGCAGGUCUGUAGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAGAAAAGAA------AAUAUG-----ACAUGGAUGAGUA .....((((.(((......)))..))))..(....)...((((((((.(((((....)).)))(((.(.........------....).-----))).)))))))). ( -25.72) >DroSec_CAF1 10089 93 + 1 UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAUAAAUGAA------AGUAU--------AUAGAUGAGUA .........((((...((((....)))).....))))..(((((((..(((((....)).))).....(((.((...------.)).)--------)).))))))). ( -25.40) >DroSim_CAF1 10241 93 + 1 UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAUAAAUGAA------AGUAU--------AUAGAUGAGUA .........((((...((((....)))).....))))..(((((((..(((((....)).))).....(((.((...------.)).)--------)).))))))). ( -25.40) >DroEre_CAF1 10002 97 + 1 UGAAUGGCAGGUCUGUGGCGGCGAUGCCUAGAUGACUGAACUCAUCUUGCAGGCAAGCCAUGCUGUGGAGAAAUCAA------GAUAUGU----ACAGGGAUUAAUA ...(((((..((((((((((....)))).((((((......)))))).))))))..))))).(((((.(........------....).)----))))......... ( -29.60) >DroWil_CAF1 12560 96 + 1 UAAAUGGCAAAUCUGUUGUGGCAAGUCCCAGGUGUCCGAAUUCAUCUUGCAGGCAGGCCAUGCUUUAAAAG-AUUAAAUGGAAAAUA----------UUUAUUAAUA ...(((((....(((((...(((((.....((...))........))))).))))))))))..........-..((((((.....))----------))))...... ( -17.22) >DroYak_CAF1 9851 101 + 1 UAAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCUUGCAGGCAAGCCAUGCUGUGGAGAAAUCAA------AAUAUGUUCAUACAUAGAUCAAUA .........((((((((..(((..(((((((((((......))))))...))))).)))....((((((.(.((...------.)).).)))))))))))))).... ( -30.70) >consensus UGAAGGGCAGGUCUGUGGCGGCGAUGCCUAGGUGACCGAACUCAUCCUGCAGGCAAGCCAUGCUGUGAAGAAAUGAA______AAUAU________AUAGAUGAAUA .....(((..((((((((.(((...)))..(((((......)))))))))))))..)))................................................ (-19.55 = -19.72 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:46 2006