Locus 7313

Sequence ID 3L_DroMel_CAF1
Location 19,593,383 – 19,593,473
Length 90
Max. P 0.500000
window11882

overview

Window 2

Location 19,593,383 – 19,593,473
Length 90
Sequences 6
Columns 90
Reading direction reverse
Mean pairwise identity 77.55
Mean single sequence MFE -18.40
Consensus MFE -12.40
Energy contribution -12.48
Covariance contribution 0.08
Combinations/Pair 1.14
Mean z-score -1.06
Structure conservation index 0.67
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19593383 90 - 23771897
UGCCCUGGGCAUGCAGUAUCUGCAUUCCCACAAGAUCAUACACCGAGAUCUAAAGAGUCCAAAGUAAGUUAAAGAAACAACAUCGAAAAU
(((..(((((((((((...)))))).......(((((.........))))).....)))))..)))........................ ( -17.30)
>DroVir_CAF1 9080 90 - 1
AGCGCUGGGCAUGCAAUAUUUGCACUCGCACAAGAUCAUACACAGAGAUCUGAAAAGUCCGAAGUGAGUUGAGAAAUUGGAAUUCUAAAG
..((((((((.((((.....))))........(((((.........))))).....))))..))))..........((((....)))).. ( -15.90)
>DroPse_CAF1 7890 85 - 1
UGCCCAGGGAAUGCAGUAUCUGCAUUCCCACAAGAUCAUACACAGAGAUCUGAAGAGUCCCAAGUGAGUG-----CACCCAAUCCAGCAG
(((...((((((((((...))))))))))...(((((.........)))))............(((....-----)))........))). ( -23.30)
>DroGri_CAF1 8288 88 - 1
UGCAAUGGGUAUGCAAUAUUUGCACUCACACAAGAUCAUACACAGAGAUCUAAAGAGUCCCAAGUGAGUAUAUUAAUA--CAGUCCACAA
.....((((...(((.....)))((((.....(((((.........)))))...)))))))).(((.((((....)))--)....))).. ( -15.40)
>DroYak_CAF1 8881 90 - 1
UGCCCUGGGCAUGCAGUAUCUGCAUUCCCACAAGAUUAUACACAGAGAUCUAAAGAGUCCAAAGUAAGUUAUAGAAACAUCAUUAAAAAG
(((..(((((((((((...)))))).......(((((.........))))).....)))))..)))........................ ( -15.20)
>DroPer_CAF1 7903 85 - 1
UGCCCAGGGAAUGCAGUAUCUGCAUUCCCACAAGAUCAUACACAGAGAUCUGAAGAGUCCCAAGUGAGUG-----CACCCAAUCCAGCAG
(((...((((((((((...))))))))))...(((((.........)))))............(((....-----)))........))). ( -23.30)
>consensus
UGCCCUGGGCAUGCAGUAUCUGCAUUCCCACAAGAUCAUACACAGAGAUCUAAAGAGUCCCAAGUGAGUU_A__AAACACAAUCCAAAAG
......(((.((((((...)))))).)))...(((((.........)))))....................................... (-12.40 = -12.48 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:45 2006