Locus 7312

Sequence ID 3L_DroMel_CAF1
Location 19,587,925 – 19,588,033
Length 108
Max. P 0.940329
window11881

overview

Window 1

Location 19,587,925 – 19,588,033
Length 108
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 66.46
Mean single sequence MFE -25.89
Consensus MFE -14.49
Energy contribution -14.69
Covariance contribution 0.20
Combinations/Pair 1.15
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value 1.31
SVM RNA-class probability 0.940329
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19587925 108 + 23771897
UCUCCAAGAUUGGAUAAAAAGAG------------UAGGUCUGCAAACAGGCAAGCAGGUGGCAGAUCCUCAUCCACAAAGUCACCUGGACUUACCAAAUCUAGAGAAAAUACAUCAAAU
((((..(((((((.......(((------------..(((((((..((..(....)..)).)))))))))).......(((((.....))))).)).))))).))))............. ( -27.00)
>DroSec_CAF1 3375 83 + 1
-------------------------------------GGUCUGCCACCAGGCAAGCAGGUGGCAGAUCCUCAUCCACAAAGUCACCUGGACUUACCAAAUCUAGAGAAAAUACAUCACAU
-------------------------------------(((((((((((..(....).)))))))))))(((.......(((((.....)))))..........))).............. ( -23.83)
>DroSim_CAF1 3130 83 + 1
-------------------------------------GGUCUGCCACCAGGCAAGCAGGUGGCAGAUCCUCAUCCACAAAGUCACCUGGCCUUACCAAAUCUAGAGAAAAUACAUCAAAU
-------------------------------------(((((((((((..(....).)))))))))))(((........((....))((.....)).......))).............. ( -21.50)
>DroEre_CAF1 3533 117 + 1
ACUCCUGGAUUGGGUAAAAAGAGCACGGGAUUCGCUAGUUCUU---CUAGGCAAGCGGGUGGCAGAUACUCUUCUCCAAAGUCACCUGGACGUGGCACAUCUAGAGAAAACUUAUCAAAU
.(((.(((((((((....(((((...(..(((((((.(((...---...))).)))))))..).....))))).))))).(((((......)))))...))))))).............. ( -26.20)
>DroYak_CAF1 3429 117 + 1
ACUCCUAGGCUGGUUAAUAAGAGCUCGGCAUUUGCUAAGUCUU---CUAGACAAACGGGUGGCAGACUUUCUUCCCCAAAGUCACCUGGACGUACCAGAUCUAGAGAAAACGUAACAAAU
.(((.(((((((((...((..((((..((....))..)).)).---.)).((...((((((((.................))))))))...))))))).))))))).............. ( -30.93)
>consensus
_CUCC__G__UGG_UAA_AAGAG____________UAGGUCUGC_ACCAGGCAAGCAGGUGGCAGAUCCUCAUCCACAAAGUCACCUGGACUUACCAAAUCUAGAGAAAAUACAUCAAAU
......................................(((((....)))))...((((((((.................))))))))................................ (-14.49 = -14.69 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:44 2006