Locus 7311

Sequence ID 3L_DroMel_CAF1
Location 19,586,200 – 19,586,292
Length 92
Max. P 0.600795
window11880

overview

Window 0

Location 19,586,200 – 19,586,292
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 85.80
Mean single sequence MFE -30.18
Consensus MFE -22.84
Energy contribution -23.15
Covariance contribution 0.31
Combinations/Pair 1.17
Mean z-score -2.29
Structure conservation index 0.76
SVM decision value 0.14
SVM RNA-class probability 0.600795
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19586200 92 - 23771897
UCCGUUUCGGGCAGGACAUAAAUCAAGGCGAAUGCCUUCAGAUAGGUGGCGAAGUUAAGAACAUUCGCCUCCUGCUGCUUGGGAGAACAUCC
....(..(((((((..........(((((....)))))....((((.((((((((.....)).)))))).)))))))))))..)........ ( -32.20)
>DroSec_CAF1 1688 92 - 1
UCCGUUUCGGGCAGGACAUAAAUCAAGGCGAAUGCCUUAAGAUAGGUGGCGAAGUUAAGAAUAUUCGCCUCCUCCUGCUUGGGAGAACUUCC
....(..(((((((((.....((((((((....)))))..))).((.((((((..........)))))).)))))))))))..)........ ( -34.70)
>DroSim_CAF1 1696 92 - 1
UCCGUUUCGGGCAGGACAUAAAUCAAGGCGAAUGCCUUCAGAUAGGUGGCGAAAUUAAGAACAUUCGCCUCCUCCUGCUUGGGAGAACUUCC
....(..(((((((((.....((((((((....)))))..))).((.((((((..........)))))).)))))))))))..)........ ( -33.90)
>DroEre_CAF1 1817 92 - 1
UCCACUUCUGGCAGGACAUAAAUCAAGGCAAAUGCCUUCAGAUAGGUGGCGAAGUUAAGAACAUUUACCUCCUGCUGCUUCGGAGAACUUCC
....((((.(((((..........(((((....)))))....((((.((..((((.....)).))..)).)))))))))..))))....... ( -23.70)
>DroYak_CAF1 1674 92 - 1
UCCACUUCUGGCAGGACAUAAAUCAAGGCGAAUGCCUUUAGAUAGGUGGCGAAGUUAAGAACAUUCGCCUCCUCCUGCUUGGGAGAACUUCC
....((((((((((((.....((((((((....)))))..))).((.((((((((.....)).)))))).)))))))).))))))....... ( -33.90)
>DroAna_CAF1 1628 92 - 1
UCCACCUCCGGCAAAAUAUACACCAGAGCGAAGGCCUUCAGGUAAGUGGCGAAAUUUUUGGAAUUCGCCAGCUCCUGCAUGGGAAAACAGCC
.........(((.........(((.((((....))..)).)))...(((((((.((....)).)))))))..((((....)))).....))) ( -22.70)
>consensus
UCCACUUCGGGCAGGACAUAAAUCAAGGCGAAUGCCUUCAGAUAGGUGGCGAAGUUAAGAACAUUCGCCUCCUCCUGCUUGGGAGAACUUCC
.....(((..((((.......((((((((....)))))..)))(((.((((((..........)))))).))).))))..)))......... (-22.84 = -23.15 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:43 2006