| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,574,114 – 19,574,214 |
| Length | 100 |
| Max. P | 0.588253 |
| Location | 19,574,114 – 19,574,214 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.45 |
| Mean single sequence MFE | -28.90 |
| Consensus MFE | -20.13 |
| Energy contribution | -20.63 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.588253 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19574114 100 + 23771897 AUGGUGAUGCCCGCACUGGGGCCAUCUUUCGGUGUGGCACCUUCAGGAACAUGGAGGUGAAUGUGCCUGUAAGGGCCACAUAUAUAGAUUAACGAAAAUA ..((((..((((......))))))))((((((((((((.((((((((.((((........)))).)))).))))))))))).((.....)).)))))... ( -38.30) >DroSec_CAF1 17465 98 + 1 AUGGUGAUGCCAGCACUGGGACCGUCUUUCGGUGUGGCACCUUCAGGAACAUGGAGGUGAAUGUGUCUGUAAGGG--AAAUAUAUAAAAUAACGAAACUA .((((..(((((.(((((..(.....)..))))))))))(((((((..((((........))))..))).)))).--...................)))) ( -28.50) >DroSim_CAF1 18427 98 + 1 AUGGUGAUGCCAGCACUGGGACCGUCUUUCGGUGUGGCACCUUCAGGAACAUGGAGGUGAAUGUGUCUGUAAGGG--AAAUAUAUAAAAUAACGAAACUA .((((..(((((.(((((..(.....)..))))))))))(((((((..((((........))))..))).)))).--...................)))) ( -28.50) >DroEre_CAF1 19925 97 + 1 AUGGUGAUGCCAGCACUGGGACCGUCUUUCGGUGUGGCCCCUUCAGGAACAUGGAGGUGAAUGUGUCUGUAAGAU--AAAUAUUCAGAAUAACAAUAAU- ........((((.(((((..(.....)..))))))))).((((((......))))))((((((((((.....)))--..))))))).............- ( -26.30) >DroYak_CAF1 17908 98 + 1 AUGGUGAUGCCAGCACUGGGACCGUCUUUCGGUGUGGCACCUUCAGGAACAUGGAGGUGAAUGUGUCUGUAAGAU--AAGUAUUUAGAAUAACAAUAAUA ........((((.(((((..(.....)..)))))))))(((((((......)))))))...(((.((((......--.......))))...)))...... ( -26.32) >DroMoj_CAF1 21235 92 + 1 AUAGUGACACCAGCGCUGGGUCCAUCUUUGGGCGUCGAUCCUUCAGGCACAUGCAGGUGAAUGUGUCUGUCAAUU--AAAAAA--UAAAUC----AGUUA ....((((.(((....)))(((((....)))))))))......(((((((((........)))))))))......--......--......----..... ( -25.50) >consensus AUGGUGAUGCCAGCACUGGGACCGUCUUUCGGUGUGGCACCUUCAGGAACAUGGAGGUGAAUGUGUCUGUAAGGG__AAAUAUAUAAAAUAACGAAAAUA .....(((((..(((((((((.....)))))))))..((((((((......))))))))...)))))................................. (-20.13 = -20.63 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:40 2006