Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,561,969 – 19,562,075 |
Length | 106 |
Max. P | 0.612818 |
Location | 19,561,969 – 19,562,075 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 76.23 |
Mean single sequence MFE | -41.13 |
Consensus MFE | -23.17 |
Energy contribution | -21.75 |
Covariance contribution | -1.41 |
Combinations/Pair | 1.48 |
Mean z-score | -1.58 |
Structure conservation index | 0.56 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612818 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19561969 106 - 23771897 C---AGGAGCAGGGCAAAGAGCUGCGGCUACCGGAGUGAUUGCAAGGAAU---CUGGAAAGUCAGGCCUAAGGAUGAGGCGGAAGCGCCGGGCUUCCAUGCUCUUGAAGAGC (---(((((((..((((...(((.(((...))).)))..))))..(((((---((((....((..((((.......)))).))....))))).)))).))))))))...... ( -41.70) >DroPse_CAF1 5543 106 - 1 C---CGCAGUCGGGCCAAGAGCUGUGGCUAUCGCAGCGACUGCAAGGAGU---CGGGCAAGUCUGGGAUGCGGAUGCGACGCAAGCGAAGGGCCUCGAUGCUGCUGAAGAAU .---.(((((((((((....(((...((..((((..(((((......)))---)).....(((((.....))))))))).)).)))....)))).))..)))))........ ( -39.30) >DroGri_CAF1 6840 112 - 1 CCGCAUGAGUCGUGCCAAGAGCUGCGGCUAUCGCAGCGAUUGCAAGGAAUCGUCCGGAAAAUCGAGCAAAUCGAUGCGUCGACGCAGACGCGCCUCCAUGCUGAAGAGCAGC (((.((((.((.(((.((..((((((.....))))))..)))))..)).)))).)))...(((((.....)))))(((((......))))).......((((....)))).. ( -40.40) >DroSim_CAF1 5714 106 - 1 C---AGGAGCAGGGCAAAGAGCUGCGGCUACCGCAGUGAUUGCAAGGAAU---CUGGAAAGUCAGGCCUAAGGAUGAGACGGAAGCGCCGUGCUUCCAUGCUCUUGAAGAGC (---(((((((..((((...(((((((...)))))))..)))).(((...---((((....)))).)))...........((((((.....)))))).))))))))...... ( -41.40) >DroAna_CAF1 6281 106 - 1 C---CGGAGCAGGGCCAAGAGCUGUGGCUACCGCAGCGACUGCAAGGAGU---CGGGGAAGUCCGGCCUAAGAAUGCGACGGAAGCGGCGGGCUUCCAUGCUCCUGAAAACG .---.(((((((((((....(((((((...)))))))((((......)))---)..((....)))))))...........((((((.....)))))).))))))........ ( -47.00) >DroPer_CAF1 5561 106 - 1 C---CGCAGUCGGGCCAAGAGCUGUGGCUAUCGCAGCGACUGCAAAGAGU---CGGGCAAGUCUGGGAUGAGGAUGCGACGCAAGCGAAGGGCCUCGAUGCUGCUGAAGAAU .---.(((((((((((....(((...((..((((..(((((......)))---)).....((((.......)))))))).)).)))....)))).))..)))))........ ( -37.00) >consensus C___AGGAGCAGGGCCAAGAGCUGCGGCUACCGCAGCGACUGCAAGGAAU___CGGGAAAGUCAGGCAUAAGGAUGCGACGGAAGCGACGGGCCUCCAUGCUCCUGAAGAGC .....(((((.(((((....(((((((...)))))))...((((.........((((....)))).........))))............)))))....)))))........ (-23.17 = -21.75 + -1.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:38 2006