Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,559,852 – 19,559,955 |
Length | 103 |
Max. P | 0.516721 |
Location | 19,559,852 – 19,559,955 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 83.21 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -19.57 |
Energy contribution | -20.02 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.35 |
Mean z-score | -1.97 |
Structure conservation index | 0.64 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.516721 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19559852 103 + 23771897 AUACUGUCUAGCCGUUUAGCCUCUGCUUCUGCAUCUAUUUCUUCUUGACUGACGGGAAUUUCU---GGUGGAAUCUCUUCCACCGUCACUGGCUGGACUGGCUUCU .........((((((((((((..(((....)))................((((.((.....))---(((((((....)))))))))))..)))))))).))))... ( -33.70) >DroSec_CAF1 3295 103 + 1 AUACUGUCUAGCCGUUUAGCCUCGGCCUCUGCAUCUAUUUCCUCUUGAUUGACAGGAAUUUCU---GGAGGAAUCUCUUCCACCGUCACUGUCUGUAUUGGCUUCU .........((((((...((....))....))..................(((((((.....(---(((((.....))))))...)).)))))......))))... ( -23.50) >DroSim_CAF1 3597 103 + 1 AUACUGUCUAGCCGUUUAGCCUCGGCCUCUGCAUCUAUUUCCUCUUGACUGACAGGAAUUUCU---GGAGGAAUCUCUUCCACCGUCACUGGCUGUAUUGGCUUCU .........(((((..(((((.(((.............(((((.((....)).)))))....(---(((((.....))))))))).....)))))...)))))... ( -27.70) >DroEre_CAF1 5980 103 + 1 AUACUGUCUAGCCGUUUAGCCUCUGCUUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU---GGAGGAAUCUCUUCCACCGCAGCUGGCUGGACUGGUUUCU .........((((((((((((.((((..........((((((((......)).))))))...(---(((((.....))))))..))))..)))))))).))))... ( -33.90) >DroYak_CAF1 3590 103 + 1 AUACUGUCUAGCCGUUUUGCCUCUGCCUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU---GGAGGAAUCACUUCCACCGUCGCUGGCUGGACUGGCUUAU ...(.(((((((((....((...(((....))).................((((((.....)(---(((((.....)))))))))))))))))))))).)...... ( -29.00) >DroPer_CAF1 3363 106 + 1 AUUUUCUCCAGGCGCUUGGCCUCUGCCGCAGCAUCGAUUUCCUCCUGCGUGGCGUGCAUUUCCAUAGGGGAAACCACCUCCACGGGCACUGGCAGAACUGUGGAAG ......(((((((.....)))((((((((.(((..((.....)).)))...))((((..........((....)).((.....)))))).))))))....)))).. ( -35.80) >consensus AUACUGUCUAGCCGUUUAGCCUCUGCCUCUGCAUCUAUUUCCUCUUGACUGACGGGAAUUUCU___GGAGGAAUCUCUUCCACCGUCACUGGCUGGACUGGCUUCU .........((((((((((((...((....))......(((((.((....)).)))))........(((((.....))))).........)))))))).))))... (-19.57 = -20.02 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:35 2006