| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,541,177 – 19,541,273 |
| Length | 96 |
| Max. P | 0.522239 |
| Location | 19,541,177 – 19,541,273 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 66.69 |
| Mean single sequence MFE | -30.05 |
| Consensus MFE | -12.03 |
| Energy contribution | -12.32 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.40 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.522239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19541177 96 - 23771897 UCGUGGACAGAUGGAAGAAGACCAUCCGCUGGUCGUUCACUCCACUGGCUCUGGCCAAAGUAAUGCUCCCAGCUGCCGGACCCAUGC--CAGACCCAU-------- ..(((((....((((....(((((.....))))).)))).)))))(((.((((((....((...((........))...))....))--)))).))).-------- ( -30.50) >DroPse_CAF1 3208 103 - 1 AGCUAGGCAGAUGGA---AGACAGUCGAAUGGUCAUUCCGUUGGUAUGUUCGACCCAUUAAAAUGGUCUCAGCUGCUGGACUCGUAAAGCAGAACCAGCAGAAACA (((...((.((((((---((((.........))).))))))).))..))).((((.........))))....(((((((..((........)).)))))))..... ( -27.70) >DroSec_CAF1 12317 93 - 1 ACGUGGACAAAUGGA---AGACCAUCCGGUGGUCGUUCACUCCACUGGCUCUGGCCAAAACAUUGCUCCCAGCUGCCGGACCCAUGC--CAGACCCAU-------- ..(((((....((((---.((((((...)))))).)))).)))))(((.((((((.........((........)).........))--)))).))).-------- ( -30.27) >DroEre_CAF1 3432 85 - 1 ACGUGGACAGCUGGA---AGACCAUCCGAUGGUCGUUCACUCCUCUGGCUCUGGCCAUUAUACUGGUCCCAGCUGACGAACCCACGG-----A------------- .(((((.(((((((.---.(((((...((((((((....(......)....))))))))....))))))))))))......))))).-----.------------- ( -33.20) >DroYak_CAF1 28897 84 - 1 ACGUGGACAGAUGGA---AGACCAUCGGAUGGUCGUUCACUCCUCGGGCUCUAGCCAUAAUAAUGGUCCCAGCUGACGGACCCACGG------------------- .(((((.....((((---.((((((...)))))).)))).(((((((.((...(((((....)))))...)))))).))).))))).------------------- ( -29.80) >DroPer_CAF1 3189 103 - 1 AGCUAGGCAGAUGGA---AGACAGUCGAAUGGUCAUUCCGUUGGUAUGUUCGAACCAUUAAAAUGGUCUCAGCUGCUGGACUCGUAAAGCAGAACCAGCAGAAACA (((...((.((((((---((((.........))).))))))).))..))).(((((((....))))).))..(((((((..((........)).)))))))..... ( -28.80) >consensus ACGUGGACAGAUGGA___AGACCAUCCGAUGGUCGUUCACUCCACUGGCUCUAGCCAUAAUAAUGGUCCCAGCUGCCGGACCCAUGA__CAGA_CCA_________ ...(((.(((.(((.....((((((...))))))............(((....)))............))).))))))............................ (-12.03 = -12.32 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:32 2006