Locus 7302

Sequence ID 3L_DroMel_CAF1
Location 19,539,906 – 19,540,002
Length 96
Max. P 0.561030
window11868

overview

Window 8

Location 19,539,906 – 19,540,002
Length 96
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 84.11
Mean single sequence MFE -37.96
Consensus MFE -29.03
Energy contribution -28.62
Covariance contribution -0.41
Combinations/Pair 1.18
Mean z-score -1.70
Structure conservation index 0.76
SVM decision value 0.05
SVM RNA-class probability 0.561030
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19539906 96 - 23771897
--AAGAA-GCC----CUACU-------GUCAGCCGGGACACUGAAACAUUCCACCCCAUAGCAUGGCCUCGGUCGCCGCUUGGCUGCCCUUCGCCCGGGCGGCGGCCAUC
--..((.-(((----...((-------((......(((...........))).....))))...))).))(((((((((((((..((.....)))))))))))))))... ( -36.40)
>DroPse_CAF1 1572 106 - 1
GCGAGAGCCAC----CCACUUUUGCACGACAGCCGGGACACUGAAACAUUCCACCCAAUAGCAUGGCCUCGGUCGCCGCUUGGCUUCCCUUUGCACGGGCGGCGGCCAUC
..(((.((((.----.(......((......)).(((................)))....)..)))))))((((((((((((((........)).))))))))))))... ( -40.99)
>DroSec_CAF1 11063 96 - 1
--AAGAA-GCC----CUACU-------GUCAGCCGGGACACUGAAACAUUCCACCCCAUAGCAUGGCCUCGGUCGCCGCUUGGCUGCCCUUCGCCCGGGCGGCGGCCAUC
--..((.-(((----...((-------((......(((...........))).....))))...))).))(((((((((((((..((.....)))))))))))))))... ( -36.40)
>DroEre_CAF1 2178 97 - 1
--AAGAAGGCC----CUACU-------GUCAGCCGGGACACUGAAACAUUCCACCCCACAGCAUGGCCUCGGUCGCCGCUUGGCUGCCCUUCGCCCGGGCGGCGGCCAUC
--..((.((((----...((-------((......(((...........))).....))))...))))))(((((((((((((..((.....)))))))))))))))... ( -41.00)
>DroWil_CAF1 20899 98 - 1
-----ACGUCCUUAGCCAGU-------CUCCGGUAGGACACUGAAACAUUCCACCACACAGUAUGGCCUCGGUCGCCGCUUGGCUGCCUUUCGCCCGAGCGGCGGCCAUU
-----..(((((..(((...-------....))))))))((((...............))))........(((((((((((((..((.....)))))))))))))))... ( -38.86)
>DroAna_CAF1 3366 96 - 1
--GAGAA-UCU----CUAGA-------GUUAACCGGGACACUGAAACAUUCCACCCCAUAGCAUGGCCUCGGUCGCCGCUUGGCUGCCCUUCGCCCGGGCGGCGGCCAUC
--(((..-...----...((-------((....(((....)))....))))....((((...)))).)))(((((((((((((..((.....)))))))))))))))... ( -34.10)
>consensus
__AAGAA_GCC____CUACU_______GUCAGCCGGGACACUGAAACAUUCCACCCCAUAGCAUGGCCUCGGUCGCCGCUUGGCUGCCCUUCGCCCGGGCGGCGGCCAUC
.................................(((....)))...........................((((((((((((((........)).))))))))))))... (-29.03 = -28.62 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:32 2006