Locus 7301

Sequence ID 3L_DroMel_CAF1
Location 19,538,331 – 19,538,451
Length 120
Max. P 0.624447
window11867

overview

Window 7

Location 19,538,331 – 19,538,451
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 88.56
Mean single sequence MFE -39.85
Consensus MFE -34.76
Energy contribution -35.07
Covariance contribution 0.31
Combinations/Pair 1.22
Mean z-score -1.50
Structure conservation index 0.87
SVM decision value 0.19
SVM RNA-class probability 0.624447
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19538331 120 - 23771897
CAAGGACUUCGGAUCCUCGGCUACACGCUCAAGUCCUGCGCCAGCGAACUGGGCUUCCUUGUCUUCUCGCUGGCCAUGGCCAUUAUCAUCUUUGCCACCGUCAUGUUCUACGCCGAGAAG
...((((....).)))(((((.....((.........))((((((((...((((......))))..))))))))((((((......((....)).....))))))......))))).... ( -38.70)
>DroGri_CAF1 1684 120 - 1
CAGGGUCUGCGCAUUCUCGGCUAUACGCUCAAGUCGUGCGCCAGUGAGUUAGGCUUUUUGGUCUUCUCGCUGGCCAUGGCGAUCAUCAUAUUUGCCACGGUCAUGUUCUAUGCCGAGAAA
..(.(....).).((((((((.(((.(..((.((((((.(((((((((..(((((....))))).)))))))))))))))((((..............)))).))..)))))))))))). ( -47.44)
>DroWil_CAF1 19906 120 - 1
CAGGGUCUACGUAUCCUUGGCUACACCCUCAAAUCAUGCGCCAGCGAAUUGGGCUUUCUUGUGUUCUCGCUGGCCAUGGCCAUCAUUAUAUUUGCCACCGUCAUGUUCUAUGCCGAAAAG
...(((..((((..(..((((............(((((.((((((((...((((........)))))))))))))))))..............))))..)..)))).....)))...... ( -31.97)
>DroMoj_CAF1 3621 120 - 1
CAGGGUCUGCGCAUCCUCGGCUAUACGCUCAAGUCAUGCGCCAGUGAGCUGGGCUUUCUUGUCUUUUCACUGGCCAUGGCCAUUAUCAUAUUUGCCACGGUCAUGUUCUAUGCCGAGAAA
..(.(....).)...((((((...........((((((.(((((((((..((((......)))).)))))))))))))))(((.(((...........))).)))......))))))... ( -39.90)
>DroAna_CAF1 2296 120 - 1
CAGGGACUGCGGAUCCUCGGCUACACGCUCAAGUCCUGCGCCAGUGAGCUGGGCUUCCUGGUCUUCUCGCUGGCCAUGGCCAUCAUCAUAUUUGCCACCGUAAUGUUCUACGCCGAGAAG
..((((((((((......(((((...((.........))(((((((((..(((((....))))).)))))))))..))))).....((....))...)))))..)))))........... ( -38.80)
>DroPer_CAF1 580 120 - 1
CAGGGUCUCCGCAUCCUCGGCUACACGCUCAAGUCGUGCGCCAGCGAGCUGGGCUUCCUCGUCUUCUCGCUGGCCAUGGCCAUCAUCAUCUUUGCCACCGUCAUGUUCUAUGCCGAGAAG
..((....)).....((((((..(((((....).)))).(((((((((..((((......)))).)))))))))((((((......((....)).....))))))......))))))... ( -42.30)
>consensus
CAGGGUCUGCGCAUCCUCGGCUACACGCUCAAGUCAUGCGCCAGCGAGCUGGGCUUCCUUGUCUUCUCGCUGGCCAUGGCCAUCAUCAUAUUUGCCACCGUCAUGUUCUAUGCCGAGAAG
...............((((((...........((((((.(((((((((..((((......)))).))))))))))))))).............((....))..........))))))... (-34.76 = -35.07 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:30 2006