Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,533,864 – 19,533,984 |
Length | 120 |
Max. P | 0.857751 |
Location | 19,533,864 – 19,533,984 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -46.47 |
Consensus MFE | -42.76 |
Energy contribution | -43.43 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.92 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818533 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19533864 120 + 23771897 CCUGCUGCCGCCGGCUCAGAACGAGGCCUCCACCAGGUAGGUGCCAUCCAUGGGCUGAUUGUUUUGGCUAUUCUGAGCAUUGCUGGCAGCCGGCAUGUACUUGCCGCAGGCCUAAAUAGA (((((.((.((((((.((((((((.((((((....)).))))(((.......)))...))))))))(((......)))...)))))).)).((((......))))))))).......... ( -48.00) >DroWil_CAF1 14733 119 + 1 GCUGCCGCUGCUGGCUCAGAACGAGGCCUCCACUAGAUAAGUGCCAUCCAUGGGCUGAUUGUUUUGGCUAUUUUGAGCAUUGCUGGCAGCUGGCAUAUACUUUCCACAGGCCUAAA-AGA ..(((((((((..((.(((((((((((((.((((.....))))........)))))..))))))))(((......)))...))..))))).)))).....................-... ( -38.70) >DroYak_CAF1 17502 120 + 1 CCUGCUGCUGCCGGCUCAGAACGAGGCCUCCACCAGGUAGGUGCCAUCCAUGGGCUGAUUGUUUUGGCUAUUCUGAGCAUUGCUGGCAGCUGGCAUGUACUUGCCGCAGGCCUAAACAGA (((((.(((((((((.((((((((.((((((....)).))))(((.......)))...))))))))(((......)))...))))))))).((((......))))))))).......... ( -52.70) >consensus CCUGCUGCUGCCGGCUCAGAACGAGGCCUCCACCAGGUAGGUGCCAUCCAUGGGCUGAUUGUUUUGGCUAUUCUGAGCAUUGCUGGCAGCUGGCAUGUACUUGCCGCAGGCCUAAA_AGA (((((.(((((((((.(((((((((((((.((((.....))))........)))))..))))))))(((......)))...))))))))).((((......))))))))).......... (-42.76 = -43.43 + 0.67)
Location | 19,533,864 – 19,533,984 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.50 |
Mean single sequence MFE | -44.90 |
Consensus MFE | -41.35 |
Energy contribution | -41.80 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.08 |
Mean z-score | -2.06 |
Structure conservation index | 0.92 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19533864 120 - 23771897 UCUAUUUAGGCCUGCGGCAAGUACAUGCCGGCUGCCAGCAAUGCUCAGAAUAGCCAAAACAAUCAGCCCAUGGAUGGCACCUACCUGGUGGAGGCCUCGUUCUGAGCCGGCGGCAGCAGG ..........(((.(((((......)))))((((((.((...(((((((((.(((....((.(((.....))).)).((((.....))))..)))...)))))))))..))))))))))) ( -50.10) >DroWil_CAF1 14733 119 - 1 UCU-UUUAGGCCUGUGGAAAGUAUAUGCCAGCUGCCAGCAAUGCUCAAAAUAGCCAAAACAAUCAGCCCAUGGAUGGCACUUAUCUAGUGGAGGCCUCGUUCUGAGCCAGCAGCGGCAGC ...-....(((.((((.....)))).))).((((((.((...(((((.(((.(((....((.(((.....))).)).((((.....))))..)))...))).))))).....)))))))) ( -34.40) >DroYak_CAF1 17502 120 - 1 UCUGUUUAGGCCUGCGGCAAGUACAUGCCAGCUGCCAGCAAUGCUCAGAAUAGCCAAAACAAUCAGCCCAUGGAUGGCACCUACCUGGUGGAGGCCUCGUUCUGAGCCGGCAGCAGCAGG ..........(((((((((......)))).(((((((....)(((((((((.(((....((.(((.....))).)).((((.....))))..)))...))))))))).)))))).))))) ( -50.20) >consensus UCU_UUUAGGCCUGCGGCAAGUACAUGCCAGCUGCCAGCAAUGCUCAGAAUAGCCAAAACAAUCAGCCCAUGGAUGGCACCUACCUGGUGGAGGCCUCGUUCUGAGCCGGCAGCAGCAGG ..........(((((((((......)))).((((((......(((((((((.(((....((.(((.....))).)).((((.....))))..)))...))))))))).)))))).))))) (-41.35 = -41.80 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:29 2006