Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,530,375 – 19,530,480 |
Length | 105 |
Max. P | 0.998582 |
Location | 19,530,375 – 19,530,480 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.48 |
Mean single sequence MFE | -35.80 |
Consensus MFE | -34.00 |
Energy contribution | -34.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.89 |
Structure conservation index | 0.95 |
SVM decision value | 3.15 |
SVM RNA-class probability | 0.998582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19530375 105 + 23771897 UC---UAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGCCCAGC------------GA ..---........(((((((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))....))))...------------.. ( -35.90) >DroSec_CAF1 770 105 + 1 UC---UAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGACCAGC------------GA ..---........((..(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))..)).......------------.. ( -34.00) >DroWil_CAF1 10509 120 + 1 CCUCGCAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUACAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGUUCAUCAGUCAUGUGAACGA ..((((((.........(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))(.(((.....))).))))))).... ( -39.30) >DroYak_CAF1 14229 103 + 1 UC---UA--UACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGACCAGC------------GA ..---..--....((..(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))..)).......------------.. ( -34.00) >consensus UC___UAUAUACAGGGUGCUAUGUUGUCUUUGGUUAUCUAGCUGUAUGAGUGAUAAAUAACGUCAUAAAGCUAGCUUACCGAAGUUAAUAUUAGCGUCUGACCAGC____________GA .............((..(((((((((.(((((((...((((((.(((((((........)).))))).))))))...))))))).))))).))))..))..................... (-34.00 = -34.00 + 0.00)
Location | 19,530,375 – 19,530,480 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.48 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -22.55 |
Energy contribution | -22.54 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.87 |
SVM decision value | 1.82 |
SVM RNA-class probability | 0.978607 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19530375 105 - 23771897 UC------------GCUGGGCAGACGCUAAUAUUAACUUCGGUAAGCUAGCUUUAUGACGUUAUUUAUCACUCAUACAGCUAGAUAACCAAAGACAACAUAGCACCCUGUAUAUA---GA ..------------.(((.((((..((((.......(((.(((...((((((.(((((.((........))))))).))))))...))).)))......))))...))))...))---). ( -26.72) >DroSec_CAF1 770 105 - 1 UC------------GCUGGUCAGACGCUAAUAUUAACUUCGGUAAGCUAGCUUUAUGACGUUAUUUAUCACUCAUACAGCUAGAUAACCAAAGACAACAUAGCACCCUGUAUAUA---GA ..------------.(((..(((..((((.......(((.(((...((((((.(((((.((........))))))).))))))...))).)))......))))...)))....))---). ( -24.22) >DroWil_CAF1 10509 120 - 1 UCGUUCACAUGACUGAUGAACAGACGCUAAUAUUAACUUCGGUAAGCUAGCUUUAUGACGUUAUGUAUCACUCAUACAGCUAGAUAACCAAAGACAACAUAGCACCCUGUAUAUGCGAGG ..(((((((....)).)))))....((((.......(((.(((...((((((.(((((.((........))))))).))))))...))).)))......)))).((.(((....))).)) ( -28.12) >DroYak_CAF1 14229 103 - 1 UC------------GCUGGUCAGACGCUAAUAUUAACUUCGGUAAGCUAGCUUUAUGACGUUAUUUAUCACUCAUACAGCUAGAUAACCAAAGACAACAUAGCACCCUGUA--UA---GA ..------------.(((..(((..((((.......(((.(((...((((((.(((((.((........))))))).))))))...))).)))......))))...)))..--))---). ( -24.42) >consensus UC____________GCUGGUCAGACGCUAAUAUUAACUUCGGUAAGCUAGCUUUAUGACGUUAUUUAUCACUCAUACAGCUAGAUAACCAAAGACAACAUAGCACCCUGUAUAUA___GA ....................(((..((((.......(((.(((...((((((.(((((.((........))))))).))))))...))).)))......))))...)))........... (-22.55 = -22.54 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:25 2006