| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,530,016 – 19,530,120 |
| Length | 104 |
| Max. P | 0.773853 |
| Location | 19,530,016 – 19,530,120 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 83.49 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -14.45 |
| Energy contribution | -14.23 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.773853 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19530016 104 + 23771897 AAUGCAUACAAAUUCCACGUUGCAUUUCCCAAUGCAUUCGCAGCG---GCGACGCCUGCGCAAA--AACACACUUGUAUAAGACACAAAAAGCCAAAACCAAAUCCAAA .....((((((.........((((((....))))))..(((((((---....)).)))))....--.......)))))).............................. ( -19.10) >DroSec_CAF1 422 105 + 1 AAUGCAUACAAAUUCCACGUUGCAUUUCCCAAUGCAUUCGCAGCG---GCGACGCCUGCGCAAAAAAACACACUCGUAUAAGACAUUA-AAGCCAAAGCCAAAACCAAA ..(((...............((((((....))))))...((((((---....)).)))))))..........................-.................... ( -17.80) >DroYak_CAF1 13871 96 + 1 AAUGCAUAAAAAUUCCACGUAGCAUUUCUCAAUGCAUUCGCAGCGGCGGCGACGCCUGCGCAAA--AACACACUCGCAUAAGAUAUAA--AACCAAAGCC--------- .((((................(((((....)))))....((.((((((....)))).))))...--.........)))).........--..........--------- ( -21.80) >consensus AAUGCAUACAAAUUCCACGUUGCAUUUCCCAAUGCAUUCGCAGCG___GCGACGCCUGCGCAAA__AACACACUCGUAUAAGACAUAA_AAGCCAAAGCCAAA_CCAAA .((((................(((((....)))))...(((((((.......)).)))))...............)))).............................. (-14.45 = -14.23 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:23 2006