Locus 7296

Sequence ID 3L_DroMel_CAF1
Location 19,529,813 – 19,530,008
Length 195
Max. P 0.773451
window11856 window11857 window11858

overview

Window 6

Location 19,529,813 – 19,529,918
Length 105
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 100.00
Mean single sequence MFE -31.84
Consensus MFE -31.84
Energy contribution -31.84
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 1.00
SVM decision value 0.28
SVM RNA-class probability 0.665987
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19529813 105 + 23771897
GUCUCGUUUUGGUGGGCAUAAUUGUUGAUCGUCGUAGCGUGCAUAUUUAUGGGAAUAUUUCUUGGAGCGAGGGAAAAUCAUUGCAGCUCCUCGCUUCUUCCCAUG
((..((((.((((.((((....)))).))))....)))).)).....((((((((........((((((((((..............)))))))))))))))))) ( -31.84)
>DroSec_CAF1 219 105 + 1
GUCUCGUUUUGGUGGGCAUAAUUGUUGAUCGUCGUAGCGUGCAUAUUUAUGGGAAUAUUUCUUGGAGCGAGGGAAAAUCAUUGCAGCUCCUCGCUUCUUCCCAUG
((..((((.((((.((((....)))).))))....)))).)).....((((((((........((((((((((..............)))))))))))))))))) ( -31.84)
>DroYak_CAF1 13668 105 + 1
GUCUCGUUUUGGUGGGCAUAAUUGUUGAUCGUCGUAGCGUGCAUAUUUAUGGGAAUAUUUCUUGGAGCGAGGGAAAAUCAUUGCAGCUCCUCGCUUCUUCCCAUG
((..((((.((((.((((....)))).))))....)))).)).....((((((((........((((((((((..............)))))))))))))))))) ( -31.84)
>consensus
GUCUCGUUUUGGUGGGCAUAAUUGUUGAUCGUCGUAGCGUGCAUAUUUAUGGGAAUAUUUCUUGGAGCGAGGGAAAAUCAUUGCAGCUCCUCGCUUCUUCCCAUG
((..((((.((((.((((....)))).))))....)))).)).....((((((((........((((((((((..............)))))))))))))))))) (-31.84 = -31.84 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 7

Location 19,529,878 – 19,529,991
Length 113
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 98.82
Mean single sequence MFE -36.56
Consensus MFE -35.09
Energy contribution -35.09
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.96
SVM decision value 0.20
SVM RNA-class probability 0.630185
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19529878 113 - 23771897
UGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAAACUCGAUGCCAUGGGAAGAAGCGAGGAGCUGCAAUGAUUUUCCCUCGCU
((..(.......)..))...((((((((((....))))))))))..(((.....((.(((((....))))).)).))).....(((((((................))))))) ( -35.09)
>DroSec_CAF1 284 113 - 1
UGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUGCCAUGGGAAGAAGCGAGGAGCUGCAAUGAUUUUCCCUCGCU
((..(.......)..))...((((((((((....))))))))))..(((.....((.(((((....))))).)).))).....(((((((................))))))) ( -35.09)
>DroYak_CAF1 13733 113 - 1
UGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUUCCAUGGGAAGAAGCGAGGAGCUGCAAUGAUUUUCCCUCGCU
((..(.......)..))...((((((((((....))))))))))..(((.....((((((((....)))))))).))).....(((((((................))))))) ( -39.49)
>consensus
UGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUGCCAUGGGAAGAAGCGAGGAGCUGCAAUGAUUUUCCCUCGCU
((..(.......)..))...((((((((((....))))))))))..(((.....((.(((((....))))).)).))).....(((((((................))))))) (-35.09 = -35.09 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 8

Location 19,529,918 – 19,530,008
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -25.67
Consensus MFE -24.47
Energy contribution -24.47
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.95
SVM decision value 0.54
SVM RNA-class probability 0.773451
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19529918 90 - 23771897
ACUGCGCAACGAGAUAAUGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAAACUCGAUGC
.....(((.((((....((..(.......)..))...((((((((((....))))))))))..((......)).........)))).))) ( -27.70)
>DroSec_CAF1 324 90 - 1
ACGGCACAACGAGAUAAUGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUGC
...(((...((((....((..(.......)..))...((((((((((....))))))))))..((......)).........)))).))) ( -24.90)
>DroYak_CAF1 13773 90 - 1
ACAGCGCAACGAGAUAAUGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUUC
.........((((....((..(.......)..))...((((((((((....))))))))))..((......)).........)))).... ( -24.40)
>consensus
ACAGCGCAACGAGAUAAUGGUCGGAAAAAGGUCAAAGUUGGACGAGCGCGCGUUCGUCCAGAACCAGAAACGGAAUUGAAACCUCGAUGC
.........((((....((..(.......)..))...((((((((((....))))))))))..((......)).........)))).... (-24.47 = -24.47 +  -0.00)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:22 2006