Locus 7295

Sequence ID 3L_DroMel_CAF1
Location 19,527,542 – 19,527,643
Length 101
Max. P 0.881952
window11855

overview

Window 5

Location 19,527,542 – 19,527,643
Length 101
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 96.53
Mean single sequence MFE -37.35
Consensus MFE -33.60
Energy contribution -34.35
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.17
Structure conservation index 0.90
SVM decision value 0.92
SVM RNA-class probability 0.881952
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19527542 101 - 23771897
CCGCCAAAUGAGAGGCACACAGGUAAGACAGGUAAGGGUAGGAGACAAGUACAAAGCCUGCUUGCCCAGGUGCCACUGUAUGUGUGAGUGUACCUCUCUUC
.........((((((.((((.((((((.(((((....((((....)...)))...)))))))))))((.((((....)))).))...)))).))))))... ( -37.40)
>DroSec_CAF1 15589 101 - 1
CCGCCAAAUGAGAGGCACACAGGUAAGACAGGUAAGGGUAGGAGACAAGUACAAAGCCUGCUUGCCCAGGUGCCACUGUGUGUGUGAGUUGGCCUCUCUUC
.........((((((((((((((((((.(((((....((((....)...)))...)))))))))))(((......)))..)))))......)))))))... ( -36.30)
>DroSim_CAF1 19157 101 - 1
CCGCCAAAUGAGAGGCACACAGGUAAGACAGGUAAGGGUAGGAGACAAGUACAAAGCCUGCUUGCCCAGGUGCCACUGUGUGCGUGAGUGGGCCUCUCUUC
.........(((((((.(((.((((((.(((((....((((....)...)))...)))))))))))((.(..(......)..).)).))).)))))))... ( -40.60)
>DroEre_CAF1 18388 100 - 1
CCGCCAAAUGAGAGGCACACAGGUAAGACAGGUAAGGGUAGGAGACAAGUACAAAGCCUACUUGCCC-GGUGCCACUGUGUGUGUGAGUGGGCCUCUCUUC
.........(((((((.(((.((((((..((((....((((....)...)))...)))).)))))).-.)))(((((.........))))))))))))... ( -35.10)
>consensus
CCGCCAAAUGAGAGGCACACAGGUAAGACAGGUAAGGGUAGGAGACAAGUACAAAGCCUGCUUGCCCAGGUGCCACUGUGUGUGUGAGUGGGCCUCUCUUC
.........(((((((.(((.((((((.(((((....((((....)...)))...))))))))))).......(((.......))).))).)))))))... (-33.60 = -34.35 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:19 2006