Locus 7292

Sequence ID 3L_DroMel_CAF1
Location 19,521,800 – 19,521,897
Length 97
Max. P 0.547581
window11850

overview

Window 0

Location 19,521,800 – 19,521,897
Length 97
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 79.88
Mean single sequence MFE -18.02
Consensus MFE -13.22
Energy contribution -13.25
Covariance contribution 0.03
Combinations/Pair 1.04
Mean z-score -1.08
Structure conservation index 0.73
SVM decision value 0.03
SVM RNA-class probability 0.547581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19521800 97 - 23771897
-GGGCUCUUCUGCCA-UUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUGAUGCCCCCC--GU------------------
-((((((....(((.-.(((((((((.......(((((((((((((....)))))...))))))))....)))))..)))))))...)).))))...--..------------------ ( -24.10)
>DroVir_CAF1 15097 84 - 1
----------UGCCU-UUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUC----CCCCC--AC------------------
----------.((((-..((((((((.......(((((((((((((....)))))...))))))))....)))))..)))))))....----.....--..------------------ ( -14.40)
>DroPse_CAF1 9344 117 - 1
UGGGCUCUUCUGCCUUUUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUUCUCCCUACU--CUCCCCUCCUCCCCCAAUUC
.(((.......((((...((((((((.......(((((((((((((....)))))...))))))))....)))))..)))))))......)))....--.................... ( -18.72)
>DroGri_CAF1 11193 83 - 1
----------UGCCU-UUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGGUUUUAUGACGUUACA-GCAGGUUUUC----CCCCC--AC------------------
----------.((((-..((((((((.......(((((((((((((....)))))...))))))))....))))).)-))))))....----.....--..------------------ ( -14.70)
>DroSec_CAF1 9729 97 - 1
-GGGCUCUUCUGCCA-UUGCUUAAUAGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUGAUGCUCCUC--AU------------------
-((((((....(((.-.(((((....(((....(((((((((((((....)))))...))))))))..))).....))))))))...)).))))...--..------------------ ( -21.80)
>DroMoj_CAF1 14418 86 - 1
----------UGCCU-UUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUC----CCCCCCUAU------------------
----------.((((-..((((((((.......(((((((((((((....)))))...))))))))....)))))..)))))))....----.........------------------ ( -14.40)
>consensus
__________UGCCU_UUGCUUAAUGGUUUUAGGAAAUCGAAAAUUAAAUAAUUUAUCUCGAUUUUAUGACGUUACAAGCAGGUUUUC____CCCCC__AU__________________
...........(((...((((((((.(((....(((((((((((((....)))))...))))))))..)))))))..)))))))................................... (-13.22 = -13.25 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:14 2006