Locus 7291

Sequence ID 3L_DroMel_CAF1
Location 19,518,944 – 19,519,047
Length 103
Max. P 0.987037
window11849

overview

Window 9

Location 19,518,944 – 19,519,047
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 74.87
Mean single sequence MFE -30.09
Consensus MFE -16.84
Energy contribution -17.32
Covariance contribution 0.48
Combinations/Pair 1.43
Mean z-score -2.42
Structure conservation index 0.56
SVM decision value 2.06
SVM RNA-class probability 0.987037
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19518944 103 - 23771897
UAAUUUA---AGGGUUUCGUACUACCAUCAAACUUAAUAAGCGACUCCAGAUACUCCUCCUCGUUUAUGUGAUCCAAUUCAAUAGGCGAGAGGUGAGUAUCACUAA
.......---..((..((((....................))))..)).((((((((..(((((((((.(((......))))))))))))..).)))))))..... ( -29.45)
>DroGri_CAF1 8728 105 - 1
CGGUGUUGUG-CACGCGACUGUUGCCCGCAAAUUUAAUGGCCGCCUCCAGGGAUUCCUCCUCGUUUAUGUGGUCCAGCUCAAUGGGCGUCAAGUGGGCAUCGCUCA
..(((.....-)))((((....(((((((........(((((((...(..(((....)))..).....)))).)))(((.....))).....)))))))))))... ( -35.50)
>DroSec_CAF1 6583 103 - 1
UAGUUUA---AGGAUUUCGUACUACCAUCAAACUUAAUAAGCGACUCCAGAUACUCCUCCUCGUUUAUGUGAUCUAAUUCAAUAGGCGAGAGGUGAGUAUCACUAA
((((...---.(((..((((....................)))).))).((((((((..(((((((((.(((......))))))))))))..).))))))))))). ( -30.35)
>DroSim_CAF1 10411 103 - 1
UAGUUUA---AGGAUUUCGUACUACCAUCAAACUUAAUAAGCGACUCCAGAUACUCCUCCUCGUUUAUGUGAUCCAAUUCAAUAGGCGAGAGGUGAGUAUCACUAA
((((...---.(((..((((....................)))).))).((((((((..(((((((((.(((......))))))))))))..).))))))))))). ( -30.35)
>DroYak_CAF1 11745 103 - 1
UAAUUGA---GGGAUUUUGUACUACCAUCAAACUUAAUAAGCGACUCCAGAUACUCCUCCUCGUUUAUGUGAUCGAGUUCAAUAGGCGAGAGGUGAGUAUCGCUAA
..(((((---(.(((...........)))...)))))).((((....).((((((((..(((((((((.(((......))))))))))))..).)))))))))).. ( -29.40)
>DroPer_CAF1 7491 106 - 1
UAGCUUUGUUGGUGCUUCUUGUUUCCAGCAAACUUGAUGACCGAUUCUAGAGCGUCUUCCUCGUUGAUGUGGUCCAGCUCAAUUGUGUGCAAUUGCGUCUCGUUUG
.(((((((((((.((.....))..))))))).......(((((..((..(((.(....))))...))..))))).))))((((((....))))))........... ( -25.50)
>consensus
UAGUUUA___AGGAUUUCGUACUACCAUCAAACUUAAUAAGCGACUCCAGAUACUCCUCCUCGUUUAUGUGAUCCAAUUCAAUAGGCGAGAGGUGAGUAUCACUAA
.................................................(((((((((.(((((((((.(((......)))))))))))).)).)))))))..... (-16.84 = -17.32 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:13 2006