| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,517,285 – 19,517,397 |
| Length | 112 |
| Max. P | 0.546810 |
| Location | 19,517,285 – 19,517,397 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 80.37 |
| Mean single sequence MFE | -46.33 |
| Consensus MFE | -26.67 |
| Energy contribution | -27.69 |
| Covariance contribution | 1.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.546810 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19517285 112 - 23771897 AGCCGAGCUGCUGGGCAGUUCCACGCCCAUAUUCGUGGGAUUCUCGGCGCAGACGGACGGCGGUGGCCUGGUGCCAUUUGCUCCGGGAUUCGCCAGCGCCGAACAAAUGCCG .((((((((((...))))(((((((........)))))))..))))))(((...(..(((((.((((((((.((.....)).)))).....)))).)))))..)...))).. ( -50.60) >DroVir_CAF1 11067 109 - 1 CGCGGAACUGCUGGGCACUACAACGCCCAUUUUUGUUGGCUUCUCGGCUCAAGCCGAUGGCA---ACUUGGUGCCCUUUGCUCCUGGCUUUGCCAGCGCCGAACAAAUGCCA .(((.....((.(((((((((((((........)))))(((..(((((....))))).))).---...))))))))...))..(((((...))))))))............. ( -40.60) >DroPse_CAF1 5498 112 - 1 GGCCGAGCUGCUUGGCAGCAACACACCCAUAUUCGUGGGUUUCUCGGCGCAGGCUGAUGGCGGAGGUCUGGUGCCCUUCGCUCCGGGCUUCGCCAAUGCAGAGCAAAUGCCA .((((((((((...))))).....((((((....))))))...)))))...(((...(((((.((((((((.((.....)).))))))))))))).(((...)))...))). ( -51.60) >DroGri_CAF1 6902 109 - 1 CGCUGAGCUGCUGGGCACCACAACGCCCAUAUUUGUGGGUUUCUCGGCGCAGGCCGAUGGAA---ACUUGGUGCCCUUUGCGCCUGGCUUCGCCAGCGCAGAGCAAAUGCCG .((.....((((((((((((....((((((....))))))((((((((....))))).))).---...)))))))).((((((.((((...))))))))))))))...)).. ( -51.60) >DroMoj_CAF1 10294 109 - 1 CGCGGAACUGUUGGGCACAACAACGCCCAUAUUCGUCGGAUUCUCGGCUCAAGCUGAUGGCA---AUUUGGUGCCCUUUGCUCCUGGCUUCGCCAGCGCCGAACAAAUGCCA ((((((.....(((((........)))))..)))).)).....(((((....)))))(((((---.((((((((..........((((...))))))))))))....))))) ( -35.60) >DroAna_CAF1 4802 112 - 1 AGCUGAGCUGCUGGGCAGCUCCACGCCCAUUUUCGUGGGAUUUUCAGCGCAAGCGGAUGGCGGUGGACUGGUGCCAUUUGCUCCGGGAUUCGCCAGCGCUGAACAGAUGCCG .((.(((((((...)))))))....(((((....)))))...((((((((.(((((((((((.(.....).)))))))))))..((......)).)))))))).....)).. ( -48.00) >consensus CGCCGAGCUGCUGGGCACCACAACGCCCAUAUUCGUGGGAUUCUCGGCGCAAGCCGAUGGCA___ACCUGGUGCCCUUUGCUCCGGGCUUCGCCAGCGCCGAACAAAUGCCA .((......))..((((........(((((....)))))....(((((((.......(((((....((.((.((.....)).)).))...)))))))))))).....)))). (-26.67 = -27.69 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:12 2006