Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,511,376 – 19,511,495 |
Length | 119 |
Max. P | 0.647967 |
Location | 19,511,376 – 19,511,495 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.63 |
Mean single sequence MFE | -38.18 |
Consensus MFE | -27.45 |
Energy contribution | -27.73 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -1.15 |
Structure conservation index | 0.72 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647967 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19511376 119 - 23771897 AUAUGUGUUCCUCGCGGGACAACACGUCCCGGUCGAUGAUUAUUUGUCCCGUGUGUUGGCAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACACAGAUGAACCUUCAGGCCAA-UGUA ...(((((((((((((((((.....))))).(((..((.((((.(((((.((......)).))))).))))))..)))....)))))))...)))))......((....))....-.... ( -37.90) >DroVir_CAF1 4742 107 - 1 AUGUGUGCUCCUCCCGCUUUAGCAUAUCACGGUCGAUGAUGAUUUGCCCGGUGUGCUGGCAGGGCACAUAGCAUGGAUGAUAGCGCGGGCAAACGCAAAAGAACUUA------------- .(((((((.(((...(((..((((((((..(((.(((....))).))).)))))))))))))))))))))((..........))(((......)))...........------------- ( -33.10) >DroSim_CAF1 2210 119 - 1 AUAUGUGUUCCUCGCGGGACAACACGUCCCGGUCGAUAAUUAUUUGUCCCGUGUGCUGGCAGGGUACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAACCUUCAGGCCAA-UGUA ...(((((((((((((((((.....))))).((((((((....)))))..(((((((.....)))))))......)))....)))))))...)))))......((....))....-.... ( -36.70) >DroEre_CAF1 2168 120 - 1 AUAUGUGUUCCUCCCGGGACAACACGUCCCGGUCAAUAAUUAUUUGCCCAGUGUGCUGGCAGGGUACAUAGCAUGGAUGGUAGCGGGGACAGACGCAGAUGAAUCUGUAGGUCAAUAAAA .....(((((((.(((((((.....)))))))......(((((((((...(((((((.....))))))).)))..))))))...)))))))((((((((....)))))..)))....... ( -39.10) >DroYak_CAF1 2951 119 - 1 AUAUGUGUUCCUCCCGGGACAAAACGUCCCGGUCGAUGAUUAUCUGUCCCGUGUGCUGACAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAAUCUGCAGGUAAA-AGUA .(((.....(((.(((((((.....)))))))..........(((((((((((((((.....))))))).((..........)).)))))))).(((((....))))))))....-.))) ( -45.80) >DroMoj_CAF1 4324 107 - 1 ACGUGUGCUCCUCACGCUUCAGCAUAUCACGGUCAAUGAUUAUCUGGCCGGUGUGCUGGCAGGGCACAUAGCACGGAUGGUAGCGUGGGCAAACACAAAAGAACUUG------------- ..((((....((((((((...((.((((.((((((.........))))))(((((((.....)))))))......))))))))))))))...))))...........------------- ( -36.50) >consensus AUAUGUGUUCCUCCCGGGACAACACGUCCCGGUCGAUGAUUAUUUGUCCCGUGUGCUGGCAGGGCACAUAGCAAGGAUGGUAGCGGGGACAGACGCAGAUGAACCUGCAGG_CAA__GUA ...((((.......((((((.....))))))...........(((((((((((((((.....))))))).((..........)).))))))))))))....................... (-27.45 = -27.73 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:11 2006