| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,500,626 – 19,500,717 |
| Length | 91 |
| Max. P | 0.535199 |
| Location | 19,500,626 – 19,500,717 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 77.93 |
| Mean single sequence MFE | -34.22 |
| Consensus MFE | -18.62 |
| Energy contribution | -18.73 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535199 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19500626 91 - 23771897 UCCGCUGCCUGACUAUAGGA---AACCUUGG--CUAGAGCCGGAGCGGAGGAGU-----------A-AGUGGCUAUGGAGGGAGCUGCGUAGGUAGCCACUUUUGAGA ((((((.((........(..---..)...((--(....))))))))))).....-----------(-((((((((((.((....)).)....))))))))))...... ( -32.90) >DroPse_CAF1 9716 94 - 1 UCUGCUGCCUGGCUGUAGGUUGCUACUUUGG--CAUGGGCGGGGCCUGAGGAAU-----------A-GGUUGCAAUAGAAGGAGCGGCAUAUGUCGCCACCUUUGCGA ....((((((((((((((....))))...))--).)))))))((((((.....)-----------)-))))((((....(((.(((((....)))))..))))))).. ( -32.00) >DroSec_CAF1 11350 91 - 1 UCCGCUGCCUGACUAUAGGA---AACCUUGG--CUAGAGCCGGAGCGGAGGAGU-----------A-AGUAGUUAUGGAGGGAGCUGCGUAGGUAGCCACUUUUGAGA ((((((.((........(..---..)...((--(....))))))))))).....-----------.-.........(((((..(((((....)))))..))))).... ( -28.60) >DroSim_CAF1 12263 105 - 1 UCCGCUGCCUGACUAUAGGA---AACCUUGGUCCUCGAGCCGGAGCGGAGCGCUCUCUCUUUUGUAGUGUGGCUAUGGAGGGAGCAGCGUAGGUAGCCACUUUUGACC ...((((((((((((..(..---..)..)))))(((......)))....((((((((.((((..(((.....)))..))))))).))))))))))))........... ( -39.80) >DroEre_CAF1 11732 91 - 1 UCCGCUGCCUGACUGUAGGA---AACCUUGG--AGAGAGCAGGAGCGGAGGAGU-----------A-GGUGGCUAUGGAGGGGCUCGCGUAGGUUGCCACUUUUGAGA ((((((.((((.((.((((.---...)))).--))....))))))))))(((((-----------.-((..(((((((((...))).)))).))..)))))))..... ( -34.60) >DroYak_CAF1 11499 91 - 1 UCCGCUGCCUGACUAUAGGA---AAUCUUGG--UGAGUGCAGGAGCGGAGGAGU-----------A-GGUGGCUAUGGAGGGGGCUGCGUAGGUAGCCACUUUCGAGA ((((((.(((((((.((((.---...)))).--..))).))))))))))...((-----------(-(....)))).(((((((((((....)))))).))))).... ( -37.40) >consensus UCCGCUGCCUGACUAUAGGA___AACCUUGG__CUAGAGCCGGAGCGGAGGAGU___________A_GGUGGCUAUGGAGGGAGCUGCGUAGGUAGCCACUUUUGAGA ((((((.((.(.(((.(((......))))))........).))))))))..................(((((((((..(.(......).)..)))))))))....... (-18.62 = -18.73 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:09 2006