Locus 7286

Sequence ID 3L_DroMel_CAF1
Location 19,500,256 – 19,500,349
Length 93
Max. P 0.793006
window11844

overview

Window 4

Location 19,500,256 – 19,500,349
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.23
Mean single sequence MFE -34.40
Consensus MFE -23.67
Energy contribution -26.31
Covariance contribution 2.64
Combinations/Pair 1.14
Mean z-score -2.72
Structure conservation index 0.69
SVM decision value 0.59
SVM RNA-class probability 0.793006
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19500256 93 + 23771897
GCCAUCGCCAAGGUGGCUACCUAUGCAGCUCCCGCCAUUUCAACUUAUGCGGCAGCUCCAGUGGUGACCAAAGUCGCCACUGGAUAUGGAGGA
((((((.....))))))..(((.....(((.((((.((........)))))).)))((((((((((((....)))))))))))).....))). ( -43.60)
>DroVir_CAF1 9711 93 + 1
GCGAUUGCCAAGGUGGCCAGCUAUGCAGCACCCGCCAUAUCCUCCUACUCUGCUGCUCCAGCUAUCACUCAAGUUUCCUCAAGCUACGGCAGC
....(((((..(((((..((((..((((((....................))))))...)))).)))))..(((((....)))))..))))). ( -24.15)
>DroSec_CAF1 10980 93 + 1
GCCAUCGCCAAGGUGGCUACCUAUGCAGCUCCCGCCAUUUCCACCUAUCCGGCAGCUUCAGUGGUGUCCAAAGUCGCCACUGGAUAUGGAGGA
((((((.....))))))...........((((.(((..............)))...((((((((((.(....).))))))))))...)))).. ( -33.14)
>DroEre_CAF1 11362 93 + 1
GCCAUCGCCAAGGUGGCUACCUAUGCAGCUCCCGCCAUUUCCACUUAUGCGGCCGCUCCAGUUGUGACCAAAGUCGCCACUGGAUAUGGAGCA
((((((.....))))))..........(((((.(((..............)))...((((((.(((((....))))).))))))...))))). ( -36.34)
>DroYak_CAF1 11129 93 + 1
GCCAUCGCCAAGGUGGCAACCUAUGCAGCUCCCGCCAUUUCCACUUAUCCGGCAGCUCCAGUGGUGACCAAAGUCGCCACUGGAUAUGGAGGA
((((((.....))))))...........((((.(((..............)))...((((((((((((....))))))))))))...)))).. ( -40.44)
>DroAna_CAF1 8933 93 + 1
GCCAUCGCCAAAGUGGCCACCUAUGCUGCUCCGGCCAUUUCCACUUACUCCUCAGCUCCCGUGGUGACCAAACUGGCCACCGGCUAUGGAGCA
.((((.(((.((((((((..............))))))))......................((((.((.....)).))))))).)))).... ( -28.74)
>consensus
GCCAUCGCCAAGGUGGCUACCUAUGCAGCUCCCGCCAUUUCCACUUAUCCGGCAGCUCCAGUGGUGACCAAAGUCGCCACUGGAUAUGGAGGA
((((((.....))))))...(((((..(((.(((...............))).)))((((((((((((....))))))))))))))))).... (-23.67 = -26.31 +   2.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:43:08 2006