Locus 728

Sequence ID 3L_DroMel_CAF1
Location 2,207,073 – 2,207,163
Length 90
Max. P 0.712125
window1116

overview

Window 6

Location 2,207,073 – 2,207,163
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 87.88
Mean single sequence MFE -28.92
Consensus MFE -21.66
Energy contribution -23.46
Covariance contribution 1.80
Combinations/Pair 1.13
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.38
SVM RNA-class probability 0.712125
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2207073 90 - 23771897
UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA
...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.20)
>DroSec_CAF1 258674 90 - 1
UUGGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA
...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.40)
>DroSim_CAF1 259166 90 - 1
UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA
...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.20)
>DroEre_CAF1 265602 89 - 1
UUUGAGGGCUAUGCUGCUGG-UGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGGCA
...........((((.((((-(((((......(((((((...........)))))))(.((((((....)))))).)))))))))))))) ( -27.60)
>DroAna_CAF1 252441 75 - 1
GUUGGAGGA---------------CUAGUGGUUUUGUUUUCCGGUUAUUUGGUCGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGACCA
...((((((---------------(..........)))))))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -26.20)
>consensus
UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA
...((((((((....((((((.....))))))..))))))))((((...(((.(((.(.((((((....)))))).)..)))))))))). (-21.66 = -23.46 +   1.80) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:36 2006