Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,207,073 – 2,207,163 |
Length | 90 |
Max. P | 0.712125 |
Location | 2,207,073 – 2,207,163 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 87.88 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -21.66 |
Energy contribution | -23.46 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.13 |
Mean z-score | -1.79 |
Structure conservation index | 0.75 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.712125 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2207073 90 - 23771897 UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA ...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.20) >DroSec_CAF1 258674 90 - 1 UUGGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA ...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.40) >DroSim_CAF1 259166 90 - 1 UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA ...((..((((....((..((.....))..))..))))..))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -30.20) >DroEre_CAF1 265602 89 - 1 UUUGAGGGCUAUGCUGCUGG-UGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGGCA ...........((((.((((-(((((......(((((((...........)))))))(.((((((....)))))).)))))))))))))) ( -27.60) >DroAna_CAF1 252441 75 - 1 GUUGGAGGA---------------CUAGUGGUUUUGUUUUCCGGUUAUUUGGUCGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGACCA ...((((((---------------(..........)))))))((((...(((.(((.(.((((((....)))))).)..)))))))))). ( -26.20) >consensus UUUGGGGGACAUGCUGCUGGGUGGCUUCUGGUUUUGUUUUCUGGUUAUUUGGACGAAGGGUCAUGAAUUCGUGAUGCGGUCGCCGGGCCA ...((((((((....((((((.....))))))..))))))))((((...(((.(((.(.((((((....)))))).)..)))))))))). (-21.66 = -23.46 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:49:36 2006