Locus 7278

Sequence ID 3L_DroMel_CAF1
Location 19,484,756 – 19,484,847
Length 91
Max. P 0.620301
window11829

overview

Window 9

Location 19,484,756 – 19,484,847
Length 91
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 82.52
Mean single sequence MFE -20.05
Consensus MFE -12.06
Energy contribution -11.45
Covariance contribution -0.61
Combinations/Pair 1.35
Mean z-score -2.28
Structure conservation index 0.60
SVM decision value 0.18
SVM RNA-class probability 0.620301
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19484756 91 - 23771897
------AACCAUCGGGUGGUCAUUCUCUUGGCCACACCAUUCACCAAUCGAGCUAGCUGAUUUGAUAAUUACCUCACUAACUCGUACUUAUUAUUAU
------.......(((((((((......))))))).))..........((((.(((.(((..(((...)))..)))))).))))............. ( -20.90)
>DroPse_CAF1 83584 97 - 1
AUUGGAAACCAUCGGGUGGUCAUACUCUUGGCUAAGCCAUUCACCAUUCGUGUUGGCAAAUGUAUUAAUUACUUUGCUAAUUCAUAAUUACUAUUAU
..((((...((.((((((((........((((...))))...))))))))))((((((((.(((.....)))))))))))))))............. ( -22.20)
>DroSim_CAF1 125195 91 - 1
------AACCAUCGGGUGGUCAUUCUCUUGGCCACACCAUUCACCAAUCGAGCUGGCUGAUUUGAUAAUUACCUCACUAACUCGUACUUAUUAUUAU
------.......(((((((((......))))))).))..........((((.(((.(((..(((...)))..)))))).))))............. ( -20.60)
>DroEre_CAF1 110326 91 - 1
------AACCAUCGGGUGGUCAUUCUCUUGGCCACACCAUUCACCAAUCGAGCUGGCUGAUUUGCUAAUUACCUCACUAAUUUGUACUUAUUAUUAU
------.......(((((((((......))))))).))...........(((.((((......)))).....)))...................... ( -19.10)
>DroYak_CAF1 163275 91 - 1
------AACCAUCGGGUGGUCAUUCUCUUGGCCACACCAUUCACCAAUCGAGCUAGCUGAUUUGAUAAUUACCUCACUAAUUCGUACUUAUUAUUAU
------.......(((((((((......))))))).))..........((((.(((.(((..(((...)))..)))))).))))............. ( -18.80)
>DroPer_CAF1 83684 91 - 1
AUUGGAAACCAUCGGGUGGUCAUACUCUUGGUUAAGCCAUUCACCAUUCGUGUUGGCAAAUUUAUUAAUUACUUUGCUAAUUCAUAAUUAC------
..(((.(((((..(((((....))))).)))))...)))..........(.(((((((((............))))))))).)........------ ( -18.70)
>consensus
______AACCAUCGGGUGGUCAUUCUCUUGGCCACACCAUUCACCAAUCGAGCUGGCUGAUUUGAUAAUUACCUCACUAAUUCGUACUUAUUAUUAU
.............(((((((((......))))))).))...........(((.(((.(((..((.....))..)))))).))).............. (-12.06 = -11.45 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:42:54 2006